New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1028374	NA (NA)	6 (0.200)	5/252	3.5	NA	noncoding (9/24 nt)	REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_hsa_tpiA	= 1028380	NA (NA)					noncoding (15/24 nt)	REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTAT  >  NC_000913_3_hsa_tpiA/1028236‑1028528                                                                                                                                                 |                                                                                                                                                     tctctGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGACAAATAAAAAATCCCCGGAAAGCCAAAACCtt                                                                                                                                                  >  1:277075/1‑149 (MQ=255)  ctctGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTc                                                                                                                                                 >  1:319643/1‑149 (MQ=255)                  gggTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg                                                                                                                                 >  1:57970/1‑149 (MQ=255)                   ggTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAggg                                                                                                                                >  2:586987/1‑149 (MQ=255)                     tGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGAt                                                                                                                              >  2:56106/1‑149 (MQ=255)                      gATTAAGGAGCAAGCGGCAGTACTGGCACGGGATTCCGGGTTAAATGTGGTGATGCATCGCTGGCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGAtt                                                                                                                             <  1:533370/149‑1 (MQ=255)                        ttAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGa                                                                                                                                           <  2:199191/133‑1 (MQ=255)                        ttAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGa                                                                                                                                           >  1:199191/1‑133 (MQ=255)                           aTGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTa                                                                                                                        <  1:29273/149‑1 (MQ=255)                           aTGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTa                                                                                                                        >  1:420826/1‑149 (MQ=255)                              aGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTAccc                                                                                                                     >  2:257555/1‑147 (MQ=255)                                      gCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgg                                                                                                             <  2:38135/149‑1 (MQ=255)                                        aGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgggg                                                                                                           <  2:544564/149‑1 (MQ=255)                                          tACTGGCACGGTAGGCCGGGTAAAATGTTGTGACGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCTGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGcc                                                                                                         <  2:302362/149‑1 (MQ=255)                                             tGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTgg                                                                                                      >  1:492788/1‑149 (MQ=255)                                               gCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAg                                                                                                    >  1:429317/1‑149 (MQ=255)                                                         ccGGGGTAAATGTGGAGGTGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCAAGGAAGGAAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCgg                                                                                          <  2:429317/149‑1 (MQ=255)                                                          cGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGCGATACCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCACAAACCTTCCGGGGATTTGTTCAGGGATTAGATCTGAGGTCGGAGGGCCTGGGGTTGTTTGAGGa                                                                                         >  2:571713/1‑149 (MQ=255)                                                               tAAAGGTTGTGACAGATGTCTGCCCGTCTATTGAGATCCCTCGCATGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTc                                                                                    <  2:543183/149‑1 (MQ=255)                                                                 aaTGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTg                                                                                  >  1:499646/1‑149 (MQ=255)                                                                 aaTGTGGGGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGGAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAAGCGGGGCCTGGAGTTGTTTGCGGATGGTCTg                                                                                  >  2:310526/1‑149 (MQ=255)                                                                  aTGTGGTGATGGATCGCTTCCCGGCTATTTAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc                                                                                 <  2:57015/149‑1 (MQ=255)                                                                  aTGTGGAGACGGAACGCCACCCGGCCAATGAGATCCCTCGCCTAGGCCTGGCCAAATAAAAAATCCCCAGAAAACAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACCCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc                                                                                 <  2:253421/149‑1 (MQ=255)                                                                   tgtgGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgcg                                                                                >  1:124338/1‑149 (MQ=255)                                                                       gtgATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAg                                                                            >  2:294673/1‑149 (MQ=255)                                                                              aTCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATcc                                                                     >  1:366940/1‑149 (MQ=255)                                                                                    ggccGGCTATTGAGATCCCTCGCCTGGGCCTGGACAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCatggat                                                               <  2:4707/147‑1 (MQ=255)                                                                                    gCCGGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCatggat                                                               <  2:148980/149‑1 (MQ=255)                                                                                     cccGGCTAGTGAGAGCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAACACCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCatggatg                                                              <  2:520061/149‑1 (MQ=255)                                                                                      ccGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGa                                                                                                     <  1:267781/109‑1 (MQ=255)                                                                                      ccGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGa                                                                                                     >  2:267781/1‑109 (MQ=255)                                                                                      ccGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCatggatgg                                                             >  2:389376/1‑149 (MQ=255)                                                                                      ccGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCGCATCCatggctgg                                                             >  2:213261/1‑149 (MQ=255)                                                                                      ccGGCTATTGAGACCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCatggatgg                                                             <  2:420826/149‑1 (MQ=255)                                                                                         gCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTg                                                          <  1:152673/149‑1 (MQ=255)                                                                                            aTTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGTCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCAATGCATGGCCGTTc                                                       >  2:298430/1‑149 (MQ=255)                                                                                                agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGa                                                   >  1:255882/1‑149 (MQ=255)                                                                                                agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAAGCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGa                                                   <  1:79991/149‑1 (MQ=255)                                                                                                  aTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATg                                                 >  1:560894/1‑149 (MQ=255)                                                                                                   tCCCTCGCCTGGGGCGGGCCAAATAAAAAAGCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGt                                                <  2:57970/149‑1 (MQ=255)                                                                                                       tCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc                                                                                                                                    <  2:451078/61‑1 (MQ=255)                                                                                                       tCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc                                                                                                                                    >  1:451078/1‑61 (MQ=255)                                                                                                            tgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGc                                       <  2:473730/149‑1 (MQ=255)                                                                                                               gcctggCCAAATAAAAAAGCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAAt                                    <  1:207143/149‑1 (MQ=255)                                                                                                                    gCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGCAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATCGATGGCTGTTCAGGATGTTCATCCTCCAATTCGCt                               >  2:363535/1‑149 (MQ=255)                                                                                                                          tAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAg                         >  1:258748/1‑149 (MQ=255)                                                                                                                            aaaaaTCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCt                       <  2:46211/149‑1 (MQ=255)                                                                                                                                aTCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGAATGGCTGTTCAGGATGTTCAGCCTGCAATTCGCTACTTAGCTGGGc                   >  1:166925/1‑149 (MQ=255)                                                                                                                                   cccGGAAGGCAAAAACCTTCCGGGGATTTGTTCGGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGCTGGCGTGTCAGGGTGTTCATCCTGCAATTCGCTAATTAGCTGGGCTTc                >  1:263735/1‑149 (MQ=255)                                                                                                                                    ccGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCCATTCGCTACTTAGCTGGGCGTCa               >  2:479907/1‑149 (MQ=255)                                                                                                                                    ccGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCa               >  1:272100/1‑149 (MQ=255)                                                                                                                                     cGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGTTAACGCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAg              >  1:441087/1‑149 (MQ=255)                                                                                                                                             aaaaaCCTTCCTGGGATTTGTTCAGGTATTAGTTACTCAGACGCGGGGCCTGGAGTTTTTTGCGGATGGTCTGCGCCAGCTCATCCATTTATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCaggtag      <  1:571713/149‑1 (MQ=255)                                                                                                                                             aaaaaCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGCGGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCaggtag      <  1:586987/149‑1 (MQ=255)                                                                                                                                               aaaCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCaggtaggt    >  1:540274/1‑149 (MQ=255)                                                                                                                                                 aCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTAt  <  2:540274/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTAT  >  NC_000913_3_hsa_tpiA/1028236‑1028528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.