New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3895222 =	37 (0.880)	6 (0.160)	6/258	4.4	13.8%	intergenic (+4/+50)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
	?	NC_000913_3_hsa_tpiA	3895257 =	41 (1.070)					intergenic (+39/+15)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTC  >  NC_000913_3_hsa_tpiA/3895078‑3895368                                                                                                                                                 |                                                                                                                                                   aagcaGCTGGAATTTATGGGTGGCGTGAGTCAGAAAAAAGTTGATCCGCAAACCGTAGGAGTGATTGATCAGGGTACGCTGGACCACCTTACCGGGCAATTGCCCGCATTTGGTTTGTTTATTCAGGGAGTTAAGATCTAAATaaaaaa                                                                                                                                                <  2:351555/145‑1 (MQ=255)      gCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGc                                                                                                                                           >  2:520286/1‑149 (MQ=255)              ttATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATc                                                                                                                                   <  1:520286/149‑1 (MQ=255)                          tGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAACCATGCATGGCggg                                                                                                                       >  1:266667/1‑149 (MQ=255)                                  aaCAAAGTTGATCCGCAACACGGGGAATTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAAc                                                                                                               <  2:407789/149‑1 (MQ=255)                                  aaCAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGGTTTGaaa                                                                                                               >  1:69848/1‑148 (MQ=255)                                    cAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAAcgc                                                                                                             <  2:507134/149‑1 (MQ=255)                                     aaaGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCTGGTTTTTACcgcg                                                                                                            >  2:437780/1‑149 (MQ=255)                                       aGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTATAGATCTAAGTAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCt                                                                                                          >  1:208935/1‑149 (MQ=255)                                        gTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTa                                                                                                         >  1:211509/1‑149 (MQ=255)                                             tCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAt                                                                                                    <  1:621927/149‑1 (MQ=255)                                                 cAAACCGGAGAACTGATTGATCAGGGTACGCTGGACCACCTGACCGCGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTCAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCTCTATCGATTTTa                                                                                                <  1:712573/149‑1 (MQ=255)                                                     ccGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGa                                                                                            <  2:211509/149‑1 (MQ=255)                                                               gattgatCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATaa                                                                                  <  2:512445/149‑1 (MQ=255)                                                                         ggTACCCTGACCCATCTGACAGGACAATCCACCGCATGTGGTGACTCTATTCAGCGAGTTAAGCTCTAAAGAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAACGTCGATAAAGACAATCtt                                                                        <  2:625191/149‑1 (MQ=255)                                                                           tACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTGTATACACCGAGGTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGCTTCGAACGCGCTATCGATTTTAGTGAGCGTCGATAACGACagccgttc                                                                      >  2:525146/1‑142 (MQ=255)                                                                            aCGCTGGACCACCTGACCGGGCAAATGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAg                                                                     <  1:211510/149‑1 (MQ=255)                                                                               cTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAGGACAATCTTCAGGAt                                                                  >  1:103339/1‑149 (MQ=255)                                                                                             cGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGTTTAAACAGCAGCGCaa                                                    >  2:385061/1‑149 (MQ=255)                                                                                             cGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCaa                                                    <  1:707426/149‑1 (MQ=255)                                                                                                 aaaTTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTGCAGGATAAACAGCAGCGCAACgat                                                <  1:303228/148‑1 (MQ=255)                                                                                                       aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTa                                                                                                <  1:157415/95‑1 (MQ=255)                                                                                                       aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTa                                                                                                >  2:157415/1‑95 (MQ=255)                                                                                                       aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCACTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTAc                                          >  2:422046/1‑149 (MQ=255)                                                                                                           cATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATGCTAACGATAAACAGCAGCGCAACGATGATTACGCAc                                      <  1:180034/149‑1 (MQ=255)                                                                                                            aTTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCCGCGCAACGATGATTACGCACg                                     >  2:180034/1‑149 (MQ=255)                                                                                                            aTTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACg                                     >  1:55253/1‑149 (MQ=255)                                                                                                                             aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGGTTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGAGTACGCACGGGCTTAGATCCCGCaac                    >  1:90698/1‑147 (MQ=255)                                                                                                                             aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGCCTTAGATCACGCAgc                    >  1:184112/1‑148 (MQ=255)                                                                                                                             aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAGTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACCCaca                    >  2:105165/1‑147 (MQ=255)                                                                                                                             aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAAACATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATAATTACGCACGGGCTTAGATCACGCAGa                    >  2:126251/1‑149 (MQ=255)                                                                                                                              gCGAGTTAATATCTAAATAAAAGCCCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGAc                   <  1:354233/149‑1 (MQ=255)                                                                                                                                           taaataaaAAACCCGCCAGCAATCATGCATGGCGGGGTTTTAACGCGCTATCGAGTTTAGTGAGTGTCGCTAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGAt      >  1:103986/1‑149 (MQ=255)                                                                                                                                            aaatacaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATTATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGAtt     <  1:12242/149‑1 (MQ=255)                                                                                                                                             aataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATc                                                                          <  1:661171/79‑1 (MQ=255)                                                                                                                                             aataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATc                                                                          >  2:661171/1‑79 (MQ=255)                                                                                                                                               taaaAAACCCGCCAGCAATCGTGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtc  <  2:266667/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                   AACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTC  >  NC_000913_3_hsa_tpiA/3895078‑3895368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.