New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3895222 =	37 (0.880)	6 (0.160)	6/258	4.4	13.8%	intergenic (+4/+50)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
	?	NC_000913_3_hsa_tpiA	3895257 =	41 (1.070)					intergenic (+39/+15)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGCCCAGCGCGATACCTT  >  NC_000913_3_hsa_tpiA/3895111‑3895405                                                                                                                                                   |                                                                                                                                                     aaCAAAGTTGATCCGCAACACGGGGAATTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAAc                                                                                                                                                    <  2:407789/149‑1 (MQ=255) aaCAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGGTTTGaaa                                                                                                                                                    >  1:69848/1‑148 (MQ=255)   cAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAAcgc                                                                                                                                                  <  2:507134/149‑1 (MQ=255)    aaaGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCTGGTTTTTACcgcg                                                                                                                                                 >  2:437780/1‑149 (MQ=255)      aGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTATAGATCTAAGTAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCt                                                                                                                                               >  1:208935/1‑149 (MQ=255)       gTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTa                                                                                                                                              >  1:211509/1‑149 (MQ=255)            tCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAt                                                                                                                                         <  1:621927/149‑1 (MQ=255)                cAAACCGGAGAACTGATTGATCAGGGTACGCTGGACCACCTGACCGCGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTCAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCTCTATCGATTTTa                                                                                                                                     <  1:712573/149‑1 (MQ=255)                    ccGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGa                                                                                                                                 <  2:211509/149‑1 (MQ=255)                              gattgatCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATaa                                                                                                                       <  2:512445/149‑1 (MQ=255)                                        ggTACCCTGACCCATCTGACAGGACAATCCACCGCATGTGGTGACTCTATTCAGCGAGTTAAGCTCTAAAGAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAACGTCGATAAAGACAATCtt                                                                                                             <  2:625191/149‑1 (MQ=255)                                          tACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTGTATACACCGAGGTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGCTTCGAACGCGCTATCGATTTTAGTGAGCGTCGATAACGACagccgttc                                                                                                           >  2:525146/1‑142 (MQ=255)                                           aCGCTGGACCACCTGACCGGGCAAATGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAg                                                                                                          <  1:211510/149‑1 (MQ=255)                                              cTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAGGACAATCTTCAGGAt                                                                                                       >  1:103339/1‑149 (MQ=255)                                                            cGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGTTTAAACAGCAGCGCaa                                                                                         >  2:385061/1‑149 (MQ=255)                                                            cGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCaa                                                                                         <  1:707426/149‑1 (MQ=255)                                                                aaaTTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTGCAGGATAAACAGCAGCGCAACgat                                                                                     <  1:303228/148‑1 (MQ=255)                                                                      aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTa                                                                                                                                     >  2:157415/1‑95 (MQ=255)                                                                      aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTa                                                                                                                                     <  1:157415/95‑1 (MQ=255)                                                                      aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCACTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTAc                                                                               >  2:422046/1‑149 (MQ=255)                                                                          cATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATGCTAACGATAAACAGCAGCGCAACGATGATTACGCAc                                                                           <  1:180034/149‑1 (MQ=255)                                                                           aTTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCCGCGCAACGATGATTACGCACg                                                                          >  2:180034/1‑149 (MQ=255)                                                                           aTTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACg                                                                          >  1:55253/1‑149 (MQ=255)                                                                                            aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGGTTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGAGTACGCACGGGCTTAGATCCCGCaac                                                         >  1:90698/1‑147 (MQ=255)                                                                                            aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGCCTTAGATCACGCAgc                                                         >  1:184112/1‑148 (MQ=255)                                                                                            aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAGTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACCCaca                                                         >  2:105165/1‑147 (MQ=255)                                                                                            aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAAACATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATAATTACGCACGGGCTTAGATCACGCAGa                                                         >  2:126251/1‑149 (MQ=255)                                                                                             gCGAGTTAATATCTAAATAAAAGCCCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGAc                                                        <  1:354233/149‑1 (MQ=255)                                                                                                          taaataaaAAACCCGCCAGCAATCATGCATGGCGGGGTTTTAACGCGCTATCGAGTTTAGTGAGTGTCGCTAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGAt                                           >  1:103986/1‑149 (MQ=255)                                                                                                           aaatacaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATTATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGAtt                                          <  1:12242/149‑1 (MQ=255)                                                                                                            aataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATc                                                                                                               <  1:661171/79‑1 (MQ=255)                                                                                                            aataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATc                                                                                                               >  2:661171/1‑79 (MQ=255)                                                                                                              taaaAAACCCGCCAGCAATCGTGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtc                                       <  2:266667/149‑1 (MQ=255)                                                                                                                 aaaaCCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCACAACGATGCTTACGCACGGGCTTAGGTCACGCAGACGTCCGGTCCCGAttttactc                                    >  2:34669/1‑145 (MQ=255)                                                                                                                  aaaCCCGGCAGCAATCATGCATGGCTGGTGTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGATGTCCGGTACCGATTTtcatca                                   <  2:484887/149‑1 (MQ=255)                                                                                                                  aaaCCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCCTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTccatca                                   >  2:506208/1‑149 (MQ=255)                                                                                                                      ccGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCa                               >  1:433354/1‑149 (MQ=255)                                                                                                                        gCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGt                             >  2:141009/1‑149 (MQ=255)                                                                                                                        gCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCAGCACGCAGt                             >  1:214768/1‑149 (MQ=255)                                                                                                                            gCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGga                         <  2:590569/149‑1 (MQ=255)                                                                                                                                      atgGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGccc               >  1:672183/1‑149 (MQ=255)                                                                                                                                        ggCGGGTTTTTAACGCGCTATCGATTTTAGTGAGGGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGTCGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGCCCAg             >  2:586664/1‑149 (MQ=255)                                                                                                                                             gTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGCCCAGCGCGa        >  1:362064/1‑149 (MQ=255)                                                                                                                                                   aaCGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGCCCAGCGCGATACCtt  <  2:433354/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     AACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGCCCAGCGCGATACCTT  >  NC_000913_3_hsa_tpiA/3895111‑3895405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.