mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 30.4% | 57.8 / 31.1 | 46 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 51 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 4040683 | 46 (1.350) | 11 (0.330) | 7/276 | 3.2 | 24.3% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_hsa_tpiA | = 4213144 | 23 (0.690) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3946824 | 21 (0.620) | 5 (0.150) | 5/276 | 3.9 | 13.0% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913_3_hsa_tpiA | = 4040681 | 46 (1.370) | intergenic (+45/+225) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3423665 = | NA (NA) | 5 (0.150) | 5/276 | 3.9 | 9.9% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_hsa_tpiA | = 4040683 | 46 (1.350) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 164619 | 40 (1.180) | 5 (0.150) | 5/280 | 4.0 | 11.6% | intergenic (+85/‑111) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| ? | NC_000913_3_hsa_tpiA | = 3781052 | 36 (1.060) | intergenic (+35/‑163) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4542672 | 20 (0.590) | 4 (0.130) | 4/262 | 4.2 | 17.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | = 4542968 | 19 (0.600) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1944388 = | 35 (1.030) | 4 (0.120) | 4/268 | 4.2 | 10.9% | coding (969/1011 nt) | ruvB | ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| ? | NC_000913_3_hsa_tpiA | 1944415 = | 32 (0.980) | coding (942/1011 nt) | ruvB | ATP‑dependent DNA helicase, component of RuvABC resolvasome | |||||
| * | ? | NC_000913_3_hsa_tpiA | 730458 = | 15 (0.440) | 4 (0.120) | 4/268 | 4.2 | 21.8% | coding (876/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913_3_hsa_tpiA | 3620057 = | NA (NA) | coding (866/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913_3_hsa_tpiA | 730442 = | 14 (0.410) | 4 (0.120) | 4/268 | 4.2 | 22.0% | coding (860/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913_3_hsa_tpiA | 730464 = | 15 (0.460) | coding (882/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913_3_hsa_tpiA | 584635 = | 29 (0.850) | 4 (0.120) | 4/266 | 4.2 | 13.0% | intergenic (+205/+45) | appY/ompT | global transcriptional activator; DLP12 prophage/DLP12 prophage; outer membrane protease VII; outer membrane protein 3b |
| ? | NC_000913_3_hsa_tpiA | 584664 = | 26 (0.810) | intergenic (+234/+16) | appY/ompT | global transcriptional activator; DLP12 prophage/DLP12 prophage; outer membrane protease VII; outer membrane protein 3b | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4094319 = | NA (NA) | 4 (0.120) | 4/280 | 4.4 | NA | noncoding (4/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 4285319 = | NA (NA) | noncoding (36/77 nt) | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||