mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 28.8% | 342.9 / 155.9 | 212 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 192 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 2726200 = | NA (NA) | 39 (0.260) | 23/256 | 12.7 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 228744 | 83 (0.520) | 38 (0.250) | 22/256 | 13.1 | 32.4% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 225685 | 186 (1.160) | 25 (0.160) | 19/256 | 14.3 | 12.3% | intergenic (+110/‑74) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 3426842 = | NA (NA) | intergenic (‑59/+116) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 993253 | 154 (0.960) | 19 (0.130) | 17/244 | 14.6 | 12.2% | intergenic (+19/+24) | pepN/ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| ? | NC_000913_3_hsa_tpiA | = 993259 | 134 (0.920) | intergenic (+25/+18) | pepN/ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2700568 | 128 (0.800) | 15 (0.110) | 15/230 | 14.7 | 12.3% | noncoding (49/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913_3_hsa_tpiA | = 2700581 | 105 (0.770) | noncoding (62/77 nt) | ohsC | sRNA antisense regulator of shoB toxin | |||||
| * | ? | NC_000913_3_hsa_tpiA | 59280 = | 175 (1.090) | 18 (0.130) | 15/234 | 14.9 | 10.9% | intergenic (+1/+407) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| ? | NC_000913_3_hsa_tpiA | 59320 = | 140 (1.000) | intergenic (+41/+367) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2700550 = | 136 (0.850) | 15 (0.110) | 14/230 | 15.2 | 11.9% | noncoding (31/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913_3_hsa_tpiA | 2700601 = | 105 (0.770) | intergenic (+5/+17) | ohsC/acpS | sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2090108 = | 155 (0.970) | 17 (0.120) | 15/240 | 15.3 | 10.9% | intergenic (+62/‑84) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| ? | NC_000913_3_hsa_tpiA | 2090141 = | 140 (0.980) | intergenic (+95/‑51) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase | |||||
| * | ? | NC_000913_3_hsa_tpiA | 151509 = | 155 (0.970) | 17 (0.110) | 16/248 | 15.3 | 10.9% | coding (91/597 nt) | yadK | putative fimbrial‑like adhesin protein |
| ? | NC_000913_3_hsa_tpiA | 151533 = | 134 (0.910) | coding (67/597 nt) | yadK | putative fimbrial‑like adhesin protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4277909 = | 168 (1.050) | 16 (0.110) | 14/242 | 15.9 | 9.2% | coding (459/465 nt) noncoding (140/140 nt) |
soxR ryjA |
redox‑sensitive transcriptional activator of soxS; autorepressor novel sRNA, function unknown |
| ? | NC_000913_3_hsa_tpiA | 4277940 = | 164 (1.140) | noncoding (109/140 nt) | ryjA | novel sRNA, function unknown | |||||