New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1498531	23 (0.630)	3 (0.090)	3/260	NT	12.1%	intergenic (+20/‑120)	opgD/ydcH	OPG biosynthetic periplasmic protein/DUF465 family protein
	?	NC_000913_3_hsa_tpiA	= 1498539	22 (0.640)					intergenic (+28/‑112)	opgD/ydcH	OPG biosynthetic periplasmic protein/DUF465 family protein

CCACTGATCCGGTCGATATGCGGATGTATCTACGTTGTCAGGGGGACGCTATCAGTGAAACATGGCTGTATCAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/1498381‑1498531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcacctCCCGAAGAAGGTGCCGAAGAAAAAACGATTAACTCATCACGCGGTCGTCAACATACTGACGTTTATCCGGCGCTGGCGGGAAATACTGATACAGCCATGTTTCACTGATAGCGTCCCCCTGACAACGTAGATACATCCGCAT  <  NC_000913_3_hsa_tpiA/1498539‑1498398                                                                                                                                                                                                                                                                                                       acgCTGAGCAGGTCTATATGCGGACGTATCGACGTGGTAAGGGGGACGCTATGAGTGTAACGTGGCTGTATCAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGGCGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCAC                                                                                                                                                  <  2:90343/146‑1   ACTGATCCGGTCGATATGCGGATGTATCTACGTTGTCAGGGGGACGCTATCAGTGAAACATGGCTGTATCAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCT                                                                                                                                                >  2:655716/1‑149      GATCCGGTCGATATGCGGATGTATCTACGTTGTCAGGGGGACGCTATCAGTGAAACATGGCTGTATCAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCctct                                                                                                                                             >  1:219519/1‑145                     gGGATGTATCTACGTTGTCGGGGGGACGCTATCAGTGAAACATGGCTGTATCAGTATTTCCCGCCAGGGCCGGATAAACGTGAGTATGTGGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTCCCGAAGAAGGTGCCGAA                                                                                                                              <  2:633527/148‑1                                                                                                                  GACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTCCCGAAGAAGGT                                                                                                                                    >  1:173579/1‑50                                                                                                                  GACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTCCCGAAGAAGGT                                                                                                                                    <  2:173579/50‑1                                                                                                                                                CGGCACCCCCCGAAGAAGGTGCCGAAGAAAAAACGATTAACTCATCACGCGGTCGTCAACATACTGACGTTTATCCGGCGCTGGCGGGAAATACTGATACAGCCATGTTTCACTGATAGCGTCCCCCTGACAACGTAGATACATCCGCA   <  1:170825/149‑1                                                                                                                                                 GGCACCTCCCGAAGAAGGTGCCGAAGAAAAAACGATTAACTCATCACGCGGTCGTCAACATACTGACGTTTATCCGGCGCTGGCGGGAAATACTGATACAGCCATGTTTCACTGATACCGTCCCCCTGACAACGTAGATACATCCGCAT  >  1:232335/1‑149                                                                                                                                                                                                                                                                                                       CCACTGATCCGGTCGATATGCGGATGTATCTACGTTGTCAGGGGGACGCTATCAGTGAAACATGGCTGTATCAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/1498381‑1498531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcacctCCCGAAGAAGGTGCCGAAGAAAAAACGATTAACTCATCACGCGGTCGTCAACATACTGACGTTTATCCGGCGCTGGCGGGAAATACTGATACAGCCATGTTTCACTGATAGCGTCCCCCTGACAACGTAGATACATCCGCAT  <  NC_000913_3_hsa_tpiA/1498539‑1498398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.