New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1498531	23 (0.630)	3 (0.090)	3/260	NT	12.1%	intergenic (+20/‑120)	opgD/ydcH	OPG biosynthetic periplasmic protein/DUF465 family protein
	?	NC_000913_3_hsa_tpiA	= 1498539	22 (0.640)					intergenic (+28/‑112)	opgD/ydcH	OPG biosynthetic periplasmic protein/DUF465 family protein

ATGCGGATGTATCTACGTTGTCAGGGGGACGCTATCAGTGAAACATGGCTGTATCAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGATCCCGCTCGCATTTTTCCCTAAGTTAAATGAGTAATCTGATGGTGTGTATTTCAGATACACCTTGTCAGCCACTAACAGGGAGTGCGTATGTTTCCAGAATACCGAGATTTAATATCCC  >  NC_000913_3_hsa_tpiA/1498398‑1498681                                                                                                                                              |                                                                                                                                               atGCGGATGTATCTACGTTGTCAGGGGGACGGTATCAGTGAAACATGGCTGTATCAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGaggtgcc                                                                                                                                         >  1:232335‑M2/1‑142 (MQ=255)  tGCGGATGTATCTACGTTGTCAGGGGGACGCTATCAGTGAAACATGGCTGTATCAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGgggtgccg                                                                                                                                        <  1:170825‑M2/149‑9 (MQ=255)           aTCTACGTTGTCAGGGGGACGCTATCAGTGAAACATGGCTGTATCAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTTTTCGGGGTGTGCCGTCTGGTTaa                                                                                                                               >  2:234944/1‑149 (MQ=255)            tcgaCGTTGTCAGGGGGACGCAGCTAGTATATCTTGGCTGTATCAGTTTGTCCTGCCATCGCCTGATAAACGTCAGTTTGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTaaa                                                                                                                              <  2:281880/146‑1 (MQ=255)            tCTACGCTGTCAGCGGGACGCTATCAGTGAAACATGGCTGTATCAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGACGATCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTaaa                                                                                                                              <  1:147395/149‑1 (MQ=255)              tACGTTGTCAGGGGGACGCTATCAGTGAAACATGGCTGTATCAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGGTAATCGTTTTTTCTTCGGCACCTTCTTCGGCAGGTGCCGTCTAGTTAAaca                                                                                                                            >  2:376515/1‑149 (MQ=255)                 gtggggggggggACGCGATGAGTGAACCGGGGGGGTATCAGTAGTTGCCGCAAGCGCCGTATTGAGGTATGTAGGGTGGCGATCGCGTGATGAGTTGATCGTTTTTTCGTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGa                                                                                                                         <  2:75610/142‑1 (MQ=255)                 gTTGTCGGGGGGACGCTATCAGTGAAGCAGGGCGGTAGCAGTATTTCGCGCCCGCGCCGGATAAACGTCAGTATATTGACGACCGCGTTATGTGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTACACACGa                                                                                                                         <  2:76948/149‑1 (MQ=255)                  ttGTTAGGGGGACGCTATCAGTGCAACATGGCTGTATCAGTATTTACCGCCAGCGCCGGATAAACGTCAGTATGTTGAAGACCGCGTCATGAGTCAATCGTTTTATCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGAt                                                                                                                        <  1:581777/149‑1 (MQ=255)                   tGTCAGGGGGACGGTATCAGTGAAACATGGCTGTATTAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGACGCCCGCGTGATGAGTTAATCGTTTTTTCTTCGGTACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGATc                                                                                                                       <  2:187217/149‑1 (MQ=255)                       aGGGGGACGCTATTAGTGAAACATGGCTGTATCAGTATTTCCCGCCAGCGCCGGATAAACGTCAATATGTTGACGACCGCGGGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACCATcccac                                                                                                                   >  2:214721/1‑147 (MQ=255)                        ggggggCGCTATCAGGTGAATTTGGTTGGAGCAGTATTGCACCGCAGTGCCGGATGAACGTCAGTATGTTGACGACCGCGTGCTGAGTTAATGGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGATCCCGCt                                                                                                                  <  2:74065/149‑1 (MQ=255)                                                      tCAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGATCCCGCTCGCATTTTTCCCTAAGTTAAATGAGTAATc                                                                                    >  1:512412/1‑149 (MQ=255)                                                               cgcggcAGCGCCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCCTTTGTTCGTCGGCAACTTCTTCGGGAGGTGCCGTCTGGTTAAACACGATCCCGCTCGCATTTTTCCCTAAGTTAAATGAGTAATCTGATGgtgt                                                                           <  2:518713/144‑1 (MQ=255)                                                                    cAGCGCCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGATCCAGCTCGCATTTTTCCCTAAGTTAAATGAGTAATCTGATGGTGTGTAtt                                                                      >  1:494828/1‑149 (MQ=255)                                                                      gcgcCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGGCTGGGTAAACACGATCCCGCTCGCATTTTTCCCTAAGTTAAATGAGTAATCTGATGGTGTGTATTTc                                                                    <  1:121585/149‑1 (MQ=255)                                                                       cgcCGGATAAACGTCAGTATGGTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGATCCCGCTCGCATTTTTCCCTAAGTTAAATGAGTAATCTGATGGTGTGTATTTCa                                                                   <  1:658204/149‑1 (MQ=255)                                                                        gcCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGATCCCGCTCGCATTTTTCCCTAAGTTAAATGAGTAATCTGATGGTGTGTATTTCAg                                                                  >  1:547757/1‑149 (MQ=255)                                                                                   gTCAGGATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGATCCCGCTCGCATTTTTCCCTAAGTTAAATGAGTAATCTGATGGTGTGTATTTCAGATACACCTTGt                                                       <  2:499197/149‑1 (MQ=255)                                                                                        tATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGATCCCGCTCGCATTTTTCCCTAAGTTACATGAGTCATCTGCTGGTGTGTCTTTCAGTTACCCCTTGTCCGcc                                                  >  1:195329/1‑149 (MQ=255)                                                                                            ttGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGATCCCGCTCGCATTTTTCCCTAAGTTAAATGAGTAATCTGATGGTGTGTATTTCAGATACACCTTGTCAGCCACTa                                              >  1:416960/1‑149 (MQ=255)                                                                                                           tgaGTTAATCGTTTCTTATGAGGCTCCTTCTTCTGGAGGTGCCGTCTGGTTAAACACGATCCCGCTCGCATTTTTCCCTAAGTTAAATGAGTAATCTGATGGTGTGTATTTCAGATACACCTTGTCAGCCACTAACAGGGAGTGCGTAt                               <  1:13729/149‑1 (MQ=255)                                                                                                                  atggTTTTTTGTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGATCCCGCTCGCATTTTTCCCTAAGTTAAATGAGTAATCTGATGGTGTGTATTTCAGATACACCTTGTCAGCCACTAACAGGGAGTGCGTATGTTTCCa                        <  1:383558/146‑1 (MQ=255)                                                                                                                      attattcatcGGATCCATCGTCGTGTGGTGCCGGCTGGTTAAACACGATCACGCTCGCATTTTTCCCTAATTCAAATGAGTAATCTGATGGTGTGTATTTCAGATACACCTTGTCAGCCACTAACAGGGAGTGCGTAGGTTTCCAGAAt                    <  2:414602/145‑1 (MQ=255)                                                                                                                             ttcGGCACCTTCTTCGGGaggtgccgaagaaaaaacgattaactcatcacgcggtcgtccacatactcacgtttatccggccctggcgggaaatactgatacagccatgtttcactgatagcgtccccccgacaacgtagatacatccc             <  2:633527‑M2/149‑132 (MQ=255)                                                                                                                                   aCCTTCTTCGGGaggtgccgaagaaaaaacgattaactcatcacgcggtc                                                                                                          <  2:173579‑M2/50‑39 (MQ=255)                                                                                                                                   aCCTTCTTCGGGaggtgccgaagaaaaaacgattaactcatcacgcggtc                                                                                                          >  1:173579‑M2/1‑12 (MQ=255)                                                                                                                                        cgtcGGGAGGGGCCGTGTGGTTAAATACGGTCCCGCTCGCATTTTTCCCTAAGTTAAATGAGTATTCTGATGGTGTTTTTTTCAGATATACATTGTCAGCCACTAACAGGGAGTGCGTATGTTTCCAGTATACCGAGATTGAATATccc  <  2:639325/147‑1 (MQ=255)                                                                                                                                              |                                                                                                                                               ATGCGGATGTATCTACGTTGTCAGGGGGACGCTATCAGTGAAACATGGCTGTATCAGTATTTCCCGCCAGCGCCGGATAAACGTCAGTATGTTGACGACCGCGTGATGAGTTAATCGTTTTTTCTTCGGCACCTTCTTCGGGAGGTGCCGTCTGGTTAAACACGATCCCGCTCGCATTTTTCCCTAAGTTAAATGAGTAATCTGATGGTGTGTATTTCAGATACACCTTGTCAGCCACTAACAGGGAGTGCGTATGTTTCCAGAATACCGAGATTTAATATCCC  >  NC_000913_3_hsa_tpiA/1498398‑1498681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.