New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 4124692	39 (1.070)	3 (0.080)	3/276	NT	7.1%	coding (2101/2199 nt)	priA	Primosome factor n' (replication factor Y)
	?	NC_000913_3_hsa_tpiA	= 4124710	39 (1.070)					coding (2083/2199 nt)	priA	Primosome factor n' (replication factor Y)

AATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTG  >  NC_000913_3_hsa_tpiA/4124555‑4124833                                                                                                                                          |                                                                                                                                              aaTATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGTAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCggg                                                                                                                                    <  1:606316/149‑1 (MQ=255)    atTGAATTGTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAg                                                                                                                                 <  2:587055/149‑1 (MQ=255)        aaTTTTTCGATCCGCCTCGCAGCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGtg                                                                                                                             <  1:343326/149‑1 (MQ=255)               cGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGcaac                                                                                                                      <  1:135585/149‑1 (MQ=255)                  tCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATAAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAat                                                                                                                   >  1:656540/1‑149 (MQ=255)                  tCCGCCGCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACTTCCAGCACCCATGTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAGcacccttcccgcgtgcgcttgcaacaca                                                                                                                   <  2:396626‑M1/149‑29 (MQ=255)                        tCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTgc                                                                                                             <  1:178323/149‑1 (MQ=255)                                tGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTgccagcgcca                                                                                                     <  1:118838/149‑1 (MQ=255)                                      gTTTAACCCTCAATCGTATCAACATCCAGCACCCATTCCACCTTACGGGAATCCGGTATCGTACTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGAcc                                                                                               <  2:638343/149‑1 (MQ=255)                                      gTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGAcc                                                                                               <  1:251093/149‑1 (MQ=255)                                       tttAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCg                                                                                              >  1:214536/1‑149 (MQ=255)                                                cAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTa                                                                                     <  1:269187/149‑1 (MQ=255)                                                       aTCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCa                                                                              >  2:640918/1‑149 (MQ=255)                                                        tCAACATCCAGCACCCATTTCAGCTTACGGGAACCGGGTTTTGTATTGATTAGCGCCCGCGTACCGTTACTGATGTGTTGCAAGCGCACGCGGCAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCCCGTTCAGGTGccgg                                                                             >  2:498838/1‑147 (MQ=255)                                                           aCATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCCCGTTTAGGTGCCAGAGc                                                                          >  1:189412/1‑149 (MQ=255)                                                             aTCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCCCGCGGGAAGGGTGCTGCACCAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGGGCCACAGCCg                                                                        >  2:472400/1‑149 (MQ=255)                                                               ccAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGa                                                                      >  1:438618/1‑149 (MQ=255)                                                                 aGCCCCCATTTCACCTTCCGGGAAGCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGTTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTCTAGGTGCCGGTGTCGGAAc                                                                    <  2:82635/149‑1 (MQ=255)                                                                        aTTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAcacccttcccgcgtgcgcttgcaacacat                                                                                                                  >  1:169475‑M1/1‑67 (MQ=255)                                                                        aTTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAcacccttcccgcgtgcgcttgcaacacat                                                                                                                  <  2:169475‑M1/96‑30 (MQ=255)                                                                             aCCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAAc                                                        <  1:71462/149‑1 (MQ=255)                                                                               cTTACGGGAATCCGGTATTGTATTGATGAGCGCCGGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAAccc                                                      >  1:543843/1‑149 (MQ=255)                                                                                 tACGGGAATCCGGTATTGTCTTGTTGAATGCGATGGTAAAGTTGCGACACTCTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCcac                                                    <  1:674347/149‑1 (MQ=255)                                                                                  aCGGGAATGCGGTATTGTATTGGTGAGCGCGAGCGTATCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGCGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGTTGCCAGAGCCGGAACCGGACCTAGAACCcaca                                                   <  2:327986/149‑1 (MQ=255)                                                                                   cGGTAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATTATGTGTTGCAAGCGCACACGGGAAGGGTGCGGCAACAATATCTGCCAGCGCCAGCGCCCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAg                                                  <  2:611715/149‑1 (MQ=255)                                                                                   cGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAg                                                  <  1:357004/149‑1 (MQ=255)                                                                                             gtattgtattGATGAGCGACAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCTACCGTCATGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCt                                        <  2:271284/149‑1 (MQ=255)                                                                                              tatgggattgATGGGCGCCAGCGTACCGTTAATGATGTGTTGCAAGAACACGCGCCAACGGGGGTGAAACAATATCTGCCAGTGTCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGCTAACCCACAGGTCCTCGTCTg                                       <  2:418183/143‑1 (MQ=255)                                                                                                 tgtattgATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGTCCTCCACGTTTACGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCa                                    <  1:269887/149‑1 (MQ=255)                                                                                                     ttgATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTgg                                <  1:542987/149‑1 (MQ=255)                                                                                                        atgaGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGAATGCCCGTGGGcg                             >  1:123441/1‑148 (MQ=255)                                                                                                           aGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCCAACGCGGTAAGTGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGga                          <  1:535080/149‑1 (MQ=255)                                                                                                                   cttACCGTTAATTGTGGGTTGCAAGCCCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCa                  <  1:156731/147‑1 (MQ=255)                                                                                                                       ccGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGAACAGAtt              >  1:88218/1‑149 (MQ=255)                                                                                                                       ccGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTAAAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGACGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGact              <  2:576289/149‑3 (MQ=255)                                                                                                                          ttAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACACACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGGTCAGATTAct           >  1:188112/1‑148 (MQ=255)                                                                                                                            aaTTATGTGTTGCAAGCGGACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCa         <  1:143808/149‑1 (MQ=255)                                                                                                                              tgatgTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAgt       >  1:563454/1‑149 (MQ=255)                                                                                                                                atgTGTTGCAAGCGCACGCGGGAAGGGTGttgcaacacatcattaacggtacgctggcgctcatcaatacaataccggattcccgtaaggtgaaat                                                          <  2:169475‑M2/96‑68 (MQ=255)                                                                                                                                atgTGTTGCAAGCGCACGCGGGAAGGGTGttgcaacacatcattaacggtacgctggcgctcatcaatacaataccggattcccgtaaggtgaaat                                                          >  1:169475‑M2/1‑29 (MQ=255)                                                                                                                                atgTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCCGAGCCGCAACCGGACCGAGAACCCACAGTCTCCCGTCCGCCAGCGGGCTTGCCAGGCTCACATTACGCaactg     >  2:471446/1‑145 (MQ=255)                                                                                                                                 tgtgTTGCACCGGGAAGCGGGAGGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCCCAGTTTCTCGTCGGCCAGTGGGCAGGCGCGGATCCGCTTACGCAgtcgt    >  2:425713/1‑149 (MQ=255)                                                                                                                                 tgtgTTGCAAGCGCACGCGGGAAGGGTGctgcaacacatcattaacggtacgctggcgctcatcaatacaataccggattcccgtaaggtgacatgggtgctggaagttgatccgattgagggttaaaccgctcacgatgcgcggcgga    <  2:396626‑M2/149‑122 (MQ=255)                                                                                                                                   tgtTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGttgttg  <  1:72034/149‑1 (MQ=255)                                                                                                                                   tgtTACAAAGGCACGCGGGGAGGATACTGCAACAATATCTGCTAGCGCCAGCGACCGACACGTTTAGGTGCGAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCACTGGGCTGGAGAGGAACAGATTACGAAGgtgttg  >  2:406888/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                              AATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTG  >  NC_000913_3_hsa_tpiA/4124555‑4124833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.