New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 4124692	39 (1.070)	3 (0.080)	3/276	NT	7.1%	coding (2101/2199 nt)	priA	Primosome factor n' (replication factor Y)
	?	NC_000913_3_hsa_tpiA	= 4124710	39 (1.070)					coding (2083/2199 nt)	priA	Primosome factor n' (replication factor Y)

AATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAGGAACAATGGCGCGTGCTGATT  >  NC_000913_3_hsa_tpiA/4124562‑4124857                                                                                                                                                     |                                                                                                                                                    aaTTTTTCGATCCGCCTCGCAGCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGtg                                                                                                                                                     <  1:343326/149‑1 (MQ=255)        cGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGcaac                                                                                                                                              <  1:135585/149‑1 (MQ=255)           tCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATAAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAat                                                                                                                                           >  1:656540/1‑149 (MQ=255)                 tCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTgc                                                                                                                                     <  1:178323/149‑1 (MQ=255)                         tGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTgccagcgcca                                                                                                                             <  1:118838/149‑1 (MQ=255)                               gTTTAACCCTCAATCGTATCAACATCCAGCACCCATTCCACCTTACGGGAATCCGGTATCGTACTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGAcc                                                                                                                       <  2:638343/149‑1 (MQ=255)                               gTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGAcc                                                                                                                       <  1:251093/149‑1 (MQ=255)                                tttAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCg                                                                                                                      >  1:214536/1‑149 (MQ=255)                                         cAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTa                                                                                                             <  1:269187/149‑1 (MQ=255)                                                aTCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCa                                                                                                      >  2:640918/1‑149 (MQ=255)                                                 tCAACATCCAGCACCCATTTCAGCTTACGGGAACCGGGTTTTGTATTGATTAGCGCCCGCGTACCGTTACTGATGTGTTGCAAGCGCACGCGGCAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCCCGTTCAGGTGccgg                                                                                                     >  2:498838/1‑147 (MQ=255)                                                    aCATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCCCGTTTAGGTGCCAGAGc                                                                                                  >  1:189412/1‑149 (MQ=255)                                                      aTCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCCCGCGGGAAGGGTGCTGCACCAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGGGCCACAGCCg                                                                                                >  2:472400/1‑149 (MQ=255)                                                        ccAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGa                                                                                              >  1:438618/1‑149 (MQ=255)                                                          aGCCCCCATTTCACCTTCCGGGAAGCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGTTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTCTAGGTGCCGGTGTCGGAAc                                                                                            <  2:82635/149‑1 (MQ=255)                                                                      aCCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAAc                                                                                <  1:71462/149‑1 (MQ=255)                                                                        cTTACGGGAATCCGGTATTGTATTGATGAGCGCCGGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAAccc                                                                              >  1:543843/1‑149 (MQ=255)                                                                          tACGGGAATCCGGTATTGTCTTGTTGAATGCGATGGTAAAGTTGCGACACTCTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCcac                                                                            <  1:674347/149‑1 (MQ=255)                                                                           aCGGGAATGCGGTATTGTATTGGTGAGCGCGAGCGTATCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGCGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGTTGCCAGAGCCGGAACCGGACCTAGAACCcaca                                                                           <  2:327986/149‑1 (MQ=255)                                                                            cGGTAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATTATGTGTTGCAAGCGCACACGGGAAGGGTGCGGCAACAATATCTGCCAGCGCCAGCGCCCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAg                                                                          <  2:611715/149‑1 (MQ=255)                                                                            cGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAg                                                                          <  1:357004/149‑1 (MQ=255)                                                                                      gtattgtattGATGAGCGACAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCTACCGTCATGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCt                                                                <  2:271284/149‑1 (MQ=255)                                                                                       tatgggattgATGGGCGCCAGCGTACCGTTAATGATGTGTTGCAAGAACACGCGCCAACGGGGGTGAAACAATATCTGCCAGTGTCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGCTAACCCACAGGTCCTCGTCTg                                                               <  2:418183/143‑1 (MQ=255)                                                                                          tgtattgATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGTCCTCCACGTTTACGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCa                                                            <  1:269887/149‑1 (MQ=255)                                                                                              ttgATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTgg                                                        <  1:542987/149‑1 (MQ=255)                                                                                                 atgaGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGAATGCCCGTGGGcg                                                     >  1:123441/1‑148 (MQ=255)                                                                                                    aGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCCAACGCGGTAAGTGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGga                                                  <  1:535080/149‑1 (MQ=255)                                                                                                            cttACCGTTAATTGTGGGTTGCAAGCCCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCa                                          <  1:156731/147‑1 (MQ=255)                                                                                                                ccGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGAACAGAtt                                      >  1:88218/1‑149 (MQ=255)                                                                                                                ccGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTAAAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGACGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGact                                      <  2:576289/149‑3 (MQ=255)                                                                                                                   ttAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACACACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGGTCAGATTAct                                   >  1:188112/1‑148 (MQ=255)                                                                                                                     aaTTATGTGTTGCAAGCGGACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCa                                 <  1:143808/149‑1 (MQ=255)                                                                                                                       tgatgTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAgt                               >  1:563454/1‑149 (MQ=255)                                                                                                                         atgTGTTGCAAGCGCACGCGGGAAGGGTGttgcaacacatcattaacggtacgctggcgctcatcaatacaataccggattcccgtaaggtgaaat                                                                                  <  2:169475‑M2/96‑68 (MQ=255)                                                                                                                         atgTGTTGCAAGCGCACGCGGGAAGGGTGttgcaacacatcattaacggtacgctggcgctcatcaatacaataccggattcccgtaaggtgaaat                                                                                  >  1:169475‑M2/1‑29 (MQ=255)                                                                                                                         atgTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCCGAGCCGCAACCGGACCGAGAACCCACAGTCTCCCGTCCGCCAGCGGGCTTGCCAGGCTCACATTACGCaactg                             >  2:471446/1‑145 (MQ=255)                                                                                                                          tgtgTTGCACCGGGAAGCGGGAGGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCCCAGTTTCTCGTCGGCCAGTGGGCAGGCGCGGATCCGCTTACGCAgtcgt                            >  2:425713/1‑149 (MQ=255)                                                                                                                          tgtgTTGCAAGCGCACGCGGGAAGGGTGctgcaacacatcattaacggtacgctggcgctcatcaatacaataccggattcccgtaaggtgacatgggtgctggaagttgatccgattgagggttaaaccgctcacgatgcgcggcgga                            <  2:396626‑M2/149‑122 (MQ=255)                                                                                                                            tgtTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGttgttg                          <  1:72034/149‑1 (MQ=255)                                                                                                                            tgtTACAAAGGCACGCGGGGAGGATACTGCAACAATATCTGCTAGCGCCAGCGACCGACACGTTTAGGTGCGAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCACTGGGCTGGAGAGGAACAGATTACGAAGgtgttg                          >  2:406888/1‑149 (MQ=255)                                                                                                                                       cACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGCTCAGATTACGCAGTTGTTGCAGGAACAATg               >  2:495042/1‑149 (MQ=255)                                                                                                                                            gggAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGACTACGCAGTTGTTGCAGGAACAATGGcgcg          >  1:167064/1‑149 (MQ=255)                                                                                                                                              gAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAGGAACAATGGCGCGTg        <  1:184075/149‑1 (MQ=255)                                                                                                                                                  ggTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAGGAACAATGGCGCGTGCTGa    >  1:480135/1‑149 (MQ=255)                                                                                                                                                  ggTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGCTTAGGTGCCAGAGCCGGAACCGGACCGAGACCCCACAGTTTCTCGTCTGCCCGCGGGCTGGAGAGGATCAGATTACGCAGTTCTCGCCAGAACACTGGcgcggcctta    >  2:607764/1‑143 (MQ=255)                                                                                                                                                    tgctgcAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAGGAACAATGGCGCGTGCTGAtt  >  1:31195/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAGGAACAATGGCGCGTGCTGATT  >  NC_000913_3_hsa_tpiA/4124562‑4124857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.