| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | NC_000913_3_hsa_tpiA | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_hsa_tpiA | 1978503–1979268 | 1979278 | 11–776 | 30 [0] | [0] 29 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 1978502 | 0 (0.000) | 25 (0.740) | 22/260 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913_3_hsa_tpiA | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCT > NC_000913_3_hsa_tpiA/1978357‑1978645 | aaaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGAGGAAAAGACCTCTGATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat > 1:327986‑M1/1‑146 (MQ=255) aaTGGGTCTTTACACTTATCTAAAATTTTTCCTAAATCGACGCAACTGTCCTCATCACTACACACACATACAACGGAGCGGGGCCGACATTTAAACTACTACGTTATGCAGATCACACAAATAACCAACTTACTTTACATAACTgcaac > 2:541749/1‑145 (MQ=255) tttACACTTATCTAAGATTTTTCCTAAATCGACGTAACTGTACTCGTAACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGAGCACACAAAACAATCAATTACTTAACATAAATGtataagtcataa > 2:544181‑M1/1‑137 (MQ=255) cgaagaTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg < 2:484409‑M1/147‑24 (MQ=255) cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:617292‑M1/1‑114 (MQ=255) tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc > 1:634480‑M1/1‑113 (MQ=255) tGTACTCGTCACTACACGCACATACAAAGGAGGGGGGCTGCGATTGTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAAATAAATGtataagtcaaactcttgttttgggtgtatttcaatctgtaaaaaagcttt > 2:394626‑M1/1‑99 (MQ=255) cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca < 1:660888‑M1/149‑65 (MQ=255) cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag < 1:566712‑M1/149‑67 (MQ=255) acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa < 2:513742‑M1/149‑70 (MQ=255) acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa > 1:316721‑M1/1‑80 (MQ=255) acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa > 1:316854‑M1/1‑80 (MQ=255) aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaa > 1:233593‑M1/1‑78 (MQ=255) tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcttcgctagcaagcaaaaa < 1:601179‑M1/149‑73 (MQ=255) tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa < 1:610068‑M1/149‑73 (MQ=255) aaCGGAGGTGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga < 1:106971‑M1/149‑76 (MQ=255) aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:410692‑M1/1‑51 (MQ=255) atGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGgataggtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaatcatcgaaatgggatgttg > 1:29227‑M1/1‑47 (MQ=255) gTGATGCAGATCACATAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgca < 1:481572‑M1/149‑107 (MQ=255) gTGATGCACATCACACAAAACTCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgca < 2:46992‑M1/149‑107 (MQ=255) aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctggtaaaaagtttttcgctatgctagcaagcaaaaatgaaacaggaatgatcgaaatgggatgttgcgcacag > 1:634272‑M1/1‑40 (MQ=255) cacacaAAACACTCAATTACTTAACATAAATGtataagtcatactttttttttttttttatttcaatctgttaaaaagtttttcgctaagttagcaagtaaaaatgaaataggaatattcgaaatgggatgttgcacacataaaaaata > 2:379320‑M1/1‑32 (MQ=255) acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggttttatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact > 1:364501‑M1/1‑29 (MQ=255) aaaaCACTGCATTACATAACACAAATGgataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgatacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactca < 1:177498‑M1/149‑123 (MQ=255) aaaaCACTCAATTACTTAACATAAAGGtataagtcatacttttgttttgggtgtatttcaatctgttaacaagtttttcgctacgctagcaagcaaaaatgcaacaggagtaatcgaaatgggatgttgcacacagtcaaaataactca > 1:521357‑M1/1‑27 (MQ=255) tCAATTAATTAACATAAATGtataatttctacttttgttttggttctattttaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa < 1:214565‑M1/149‑130 (MQ=255) aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataa < 1:212377‑M1/149‑133 (MQ=255) ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatc > 1:93999‑M1/1‑12 (MQ=255) aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggaggttgcgcacagtcaaaataactcaccgtaaataatcatctgcta > 1:568839‑M1/1‑7 (MQ=255) tAAATGtataagtcatacttttgtattgggtgtatttccatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctat > 2:176649‑M1/1‑6 (MQ=255) | AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCT > NC_000913_3_hsa_tpiA/1978357‑1978645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |