mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 36.2% | 170.8 / 136.0 | 149 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 426 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 72 (0.730) | 18 (0.210) | 15/238 | 8.2 | 20.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 79 (0.910) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1207805 | 73 (0.740) | 14 (0.160) | 14/238 | 8.6 | 16.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 1209602 | 75 (0.860) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 2327312 | 110 (1.110) | 14 (0.160) | 14/244 | 8.8 | 12.4% | intergenic (+19/+55) | atoB/yfaP | acetyl‑CoA acetyltransferase/DUF2135 family protein, putative host defense protein |
| ? | NC_000913_3_pae_tpiA | = 2327320 | 99 (1.110) | intergenic (+27/+47) | atoB/yfaP | acetyl‑CoA acetyltransferase/DUF2135 family protein, putative host defense protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 444558 = | 103 (1.040) | 11 (0.130) | 11/234 | 9.8 | 11.2% | intergenic (‑43/‑125) | panE/yajQ | 2‑dehydropantoate reductase, NADPH‑specific/phage Phi6 host factor, ATP/GTP binding protein |
| ? | NC_000913_3_pae_tpiA | 444606 = | 86 (1.000) | intergenic (‑91/‑77) | panE/yajQ | 2‑dehydropantoate reductase, NADPH‑specific/phage Phi6 host factor, ATP/GTP binding protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 1429011 = | 126 (1.270) | 15 (0.160) | 12/254 | 10.1 | 11.3% | intergenic (+27/‑38) | lomR/stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| ? | NC_000913_3_pae_tpiA | 1429033 = | 118 (1.270) | intergenic (+49/‑16) | lomR/stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 3600976 = | 108 (1.090) | 11 (0.120) | 11/246 | 10.2 | 10.1% | intergenic (‑193/+52) | rpoH/ftsX | RNA polymerase, sigma 32 (sigma H) factor/putative ABC transporter permease |
| ? | NC_000913_3_pae_tpiA | 3601013 = | 98 (1.090) | intergenic (‑230/+15) | rpoH/ftsX | RNA polymerase, sigma 32 (sigma H) factor/putative ABC transporter permease | |||||
| * | ? | NC_000913_3_pae_tpiA | 729363 = | 119 (1.200) | 11 (0.120) | 11/244 | 10.2 | 9.8% | intergenic (+23/‑220) | ybfA/rhsC | DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913_3_pae_tpiA | 729393 = | 96 (1.080) | intergenic (+53/‑190) | ybfA/rhsC | DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913_3_pae_tpiA | = 303629 | 91 (0.920) | 12 (0.130) | 11/244 | 10.2 | 12.8% | intergenic (+24/+224) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| ? | NC_000913_3_pae_tpiA | = 303636 | 82 (0.920) | intergenic (+31/+217) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4150329 | 88 (0.890) | 12 (0.130) | 11/252 | 10.5 | 12.0% | intergenic (‑148/+34) | eptC/ppc | LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase |
| ? | NC_000913_3_pae_tpiA | = 4150339 | 93 (1.010) | intergenic (‑158/+24) | eptC/ppc | LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3943624 | NA (NA) | 11 (0.120) | 11/256 | 10.6 | 24.9% | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_tpiA | = 3943642 | 35 (0.350) | intergenic (+132/‑62) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||