| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1263650 = | 62 (1.060) | 40 (0.700) | 36/258 | 0.9 | 40.1% | intergenic (‑150/‑64) | lolB/hemA | lipoprotein localization factor/glutamyl tRNA reductase |
| ? | NC_000913_3_pae_tpiA | = 1263818 | 59 (1.030) | coding (105/1257 nt) | hemA | glutamyl tRNA reductase | |||||
GGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/1263787‑1263650‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGC < NC_000913_3_pae_tpiA/1263818‑1263673 GGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCT > 3:20603/1‑144GGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCT < 4:20603/144‑1 ATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAAC > 3:377504/1‑150 AGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTATCAGGCGCCTCATCGATCTTAACCAACGACCACGATc > 2:276026/1‑149 TGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGAT < 1:605486/150‑1 ATACCGAGTGTCAAAAGGGTCATGTCTGCGGGAAATAAGACCGACGTTGATAGGGTTAGTCTGCTTGCATAATACAGGCTGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATAC < 4:15787/150‑1 CGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGT > 2:431895/1‑150 TAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTT > 1:338001/1‑150 AAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCGGTTCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTGTTA > 1:518124/1‑150 GGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGT < 1:431895/150‑1 TCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGG < 2:143445/147‑1 TCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGG > 1:143445/1‑147 TCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGC < 1:194148/88‑1 TCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGC > 2:194148/1‑88 GGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTG > 4:371250/1‑150 GAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCT > 3:57801/1‑150 GAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATA > 1:544905/1‑118 GAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATA < 2:544905/118‑1 CAACGTTGATAGGGTTAGTCTGCTTGCCTCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGATTTATGGTTGATACCGAGTGCTAAAAGGGTCA > 1:484252/1‑150 AACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCAT < 2:338001/150‑1 AACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGACAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGATGCCGTTATATGGGTGATACCGAGTCCTAAAAGCGACAT > 4:276689/1‑150 ACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGGTCCGGGAGCCGGTTTGTGGGTGATACCGAGTGCTAAAAGGGTCATG > 1:635261/1‑150 GATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGC < 3:121824/150‑1 GATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGC < 3:371250/150‑1 ATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCGGGCTGTCAAGCGC > 1:6470/1‑53 ATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCGGGCTGTCAAGCGC < 2:6470/53‑1 GGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATA < 2:531157/78‑1 GGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATA > 1:531157/1‑78 AGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAA > 3:403026/1‑150 CATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTT > 1:216816/1‑150 AGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGT > 4:33322/1‑150 AGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGT > 3:139339/1‑150 GGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAGAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTT < 4:57801/150‑1 GATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTA > 2:26478/1‑150 GATGCGAATGCAGGCTGTCAAGCGCATGATCGAGCTTATCCGGCGAAAACGATGCACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTGGATACCGAGTGCTAATATGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTA < 3:335413/150‑1 GCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTC < 2:216816/150‑1 GTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTG > 1:537053/1‑150 GTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAA < 4:169245/103‑1 GTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAA > 3:169245/1‑103 TAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGAGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGC > 1:412125/1‑150 AAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAA > 1:410476/1‑120 AAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAA < 2:410476/120‑1 GCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAA < 1:329852/40‑1 GCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAA > 2:329852/1‑40 GGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/1263787‑1263650‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGC < NC_000913_3_pae_tpiA/1263818‑1263673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |