New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 1263650 =62 (1.060)40 (0.700) 36/258 0.9 40.1% intergenic (‑150/‑64) lolB/hemA lipoprotein localization factor/glutamyl tRNA reductase
?NC_000913_3_pae_tpiA = 1263818 59 (1.030)coding (105/1257 nt) hemA glutamyl tRNA reductase

Only 100 of 106 total aligned reads displayed.

GTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAG  >  NC_000913_3_pae_tpiA/1263502‑1263794
                                                                                                                                                    |                                                                                                                                                
gTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCt                                                                                                                                                 <  1:409145/150‑1 (MQ=255)
gTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCt                                                                                                                                                 <  1:301345/150‑1 (MQ=255)
 tgatgaCAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCtt                                                                                                                                                <  1:557823/150‑1 (MQ=255)
  gcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggctcctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTa                                                                                                                                               >  1:412125‑M1/147‑150 (MQ=255)
   cagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTAc                                                                                                                                              >  1:537053‑M1/146‑150 (MQ=255)
     gactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGc                                                                                                                                            <  2:216816‑M1/7‑1 (MQ=255)
     gaCAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGc                                                                                                                                            <  3:347385/150‑1 (MQ=255)
        taaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATc                                                                                                                                         >  2:26478‑M1/141‑150 (MQ=255)
        taaccctatcaacgttggtattatttcccgcagacatgaccatattagcactcggtatccaccataaaacggcacctgtatcgctgcgagaacgtgcatcgttttcgccggataagctcgatcatgcgcttgacagcctgCATTCGCATc                                                                                                                                         <  3:335413‑M1/10‑1 (MQ=255)
          accctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCt                                                                                                                                       >  4:33322‑M1/139‑150 (MQ=255)
          accctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCt                                                                                                                                       >  3:139339‑M1/139‑150 (MQ=255)
                 agaTACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTatgat                                                                                                                                <  2:663637/150‑1 (MQ=255)
                  aacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTatgatg                                                                                                                               >  1:216816‑M1/131‑150 (MQ=255)
                    tACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCa                                                                                                                             <  3:70326/150‑1 (MQ=255)
                            ttatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACt                                                                                                                     >  3:403026‑M1/121‑150 (MQ=255)
                            aGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACt                                                                                                                     >  3:357802/1‑150 (MQ=255)
                               tttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCtt                                                                                                                                                <  2:410476‑M1/3‑1 (MQ=255)
                                 taACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAAccc                                                                                                                >  2:484252/1‑150 (MQ=255)
                                   aCCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTa                                                                                                              >  1:26478/1‑150 (MQ=255)
                                   aCCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTa                                                                                                              >  2:138452/1‑150 (MQ=255)
                                    cccTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAGAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTAt                                                                                                             >  1:341917/1‑150 (MQ=255)
                                    cccTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTAt                                                                                                             >  2:283789/1‑150 (MQ=255)
                                     gcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATc                                                                                                            <  3:121824‑M1/39‑1 (MQ=255)
                                     gcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATc                                                                                                            <  3:371250‑M1/39‑1 (MQ=255)
                                      cTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCtt                                                                                                                                                >  2:53084/1‑113 (MQ=255)
                                      cTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCtt                                                                                                                                                <  1:53084/113‑1 (MQ=255)
                                      cTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCa                                                                                                           >  4:409100/1‑150 (MQ=255)
                                          catgacccttttagcactcggtatcacccacaaaccggctcccggaccgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGt                                                                                                       >  1:635261‑M1/107‑150 (MQ=255)
                                           atgtcgcttttaggactcggtatcacccatataacggcatctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgtcagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGtt                                                                                                      >  4:276689‑M1/106‑150 (MQ=255)
                                           atgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGtt                                                                                                      <  2:338001‑M1/45‑1 (MQ=255)
                                            tgacccttttagcactcggtatcaaccataaatcggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGAGGCAAGCAGACTAACCCTATCAACGTTg                                                                                                     >  1:484252‑M1/105‑150 (MQ=255)
                                            gCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTg                                                                                                     <  1:369709/150‑1 (MQ=255)
                                              tAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGt                                                                                                   <  1:138452/150‑1 (MQ=255)
                                                  ttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTAc                                                                                                                                              <  4:169245‑M1/5‑1 (MQ=255)
                                                     aCCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTAttt                                                                                            >  2:537053/1‑150 (MQ=255)
                                                      agcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTc                                                                                           >  3:57801‑M1/95‑150 (MQ=255)
                                                        cactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTccc                                                                                         >  4:371250‑M1/93‑150 (MQ=255)
                                                           cGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCa                                                                                      <  2:116955/150‑1 (MQ=255)
                                                           cGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCa                                                                                      <  4:18966/150‑1 (MQ=255)
                                                            gCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAg                                                                                     >  2:412125/1‑150 (MQ=255)
                                                              tATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGAc                                                                                   >  4:322383/1‑150 (MQ=255)
                                                                  gTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGa                                                                               >  3:33322/1‑150 (MQ=255)
                                                                    accataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGAcc                                                                             <  1:431895‑M1/70‑1 (MQ=255)
                                                                     ccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGa                                                                               >  1:143445‑M1/80‑147 (MQ=255)
                                                                     ccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGa                                                                               <  2:143445‑M1/68‑1 (MQ=255)
                                                                       tGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCtt                                                                          >  1:205001/1‑150 (MQ=255)
                                                                        taacacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgaaccggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCttt                                                                         >  1:518124‑M1/77‑150 (MQ=255)
                                                                        gTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCttt                                                                         >  1:446691/1‑150 (MQ=255)
                                                                          aaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTa                                                                       >  1:338001‑M1/75‑150 (MQ=255)
                                                                                 acctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCg                                                                >  2:431895‑M1/68‑150 (MQ=255)
                                                                                  tCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCgg                                                               >  3:407337/1‑150 (MQ=255)
                                                                                    ttAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTa                                                             <  4:407337/150‑1 (MQ=255)
                                                                                     tAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTAt                                                            >  1:367062/1‑150 (MQ=255)
                                                                                     gtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCAGCCTGTATTATGCAAGCAGACTAACCCTATCAACGTCGGTCTTATTTCCCGCAGACATGACCCTTTTGACACTCGGTAt                                                            <  4:15787‑M1/87‑1 (MQ=255)
                                                                                      tatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTc                                                                                           >  1:544905‑M1/63‑118 (MQ=255)
                                                                                      tatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTc                                                                                           <  2:544905‑M1/56‑1 (MQ=255)
                                                                                       atcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCa                                                          <  1:605486‑M1/89‑1 (MQ=255)
                                                                                       aTTGCCGGGATCTCGCGGATTTTGGCCATTACACCAGAAGGAGGCGCCCTTTTATATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCa                                                          <  2:75491/150‑1 (MQ=255)
                                                                                         tGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAAc                                                        <  2:367062/150‑1 (MQ=255)
                                                                                          gCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAAcc                                                       >  1:276026/1‑150 (MQ=255)
                                                                                          gCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAAcc                                                       >  3:230330/1‑150 (MQ=255)
                                                                                                    agcGGATTGCGGCCATCACACAAACAGGAGGAGCCCTCTGTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTTTCAACCATAAAACGGc                                             <  2:341917/148‑1 (MQ=255)
                                                                                                       ggCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCGACCATAAAACGGCAcc                                          >  1:36146/1‑150 (MQ=255)
                                                                                                        tatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAAcc                                                                                                                 <  2:531157‑M1/34‑1 (MQ=255)
                                                                                                        tatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAAcc                                                                                                                 >  1:531157‑M1/45‑78 (MQ=255)
                                                                                                        gatcgtggtcgttggttaagatcgatgaggcgcctgatagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCt                                         >  2:276026‑M1/45‑150 (MQ=255)
                                                                                                          tttCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGAc                                                                                                                      >  3:171739/1‑71 (MQ=255)
                                                                                                          tttCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGAc                                                                                                                      <  4:171739/71‑1 (MQ=255)
                                                                                                          tttCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGt                                       >  4:403026/1‑150 (MQ=255)
                                                                                                            tCGGCAAGTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTAt                                     >  2:667727/1‑150 (MQ=255)
                                                                                                            gttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTAt                                     >  3:377504‑M1/41‑150 (MQ=255)
                                                                                                             ttttcgccggataagctcgatcaggcgcttgacagcctgc                                                                                                                                                  <  1:329852‑M1/1‑1 (MQ=255)
                                                                                                             ttttcgccggataagctcgatcaggcgcttgacagcctgc                                                                                                                                                  >  2:329852‑M1/40‑40 (MQ=255)
                                                                                                             cGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATc                                    <  1:387346/150‑1 (MQ=255)
                                                                                                                  aTTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGc                               <  1:98048/150‑1 (MQ=255)
                                                                                                                  aTTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGc                               <  2:143456/150‑1 (MQ=255)
                                                                                                                    tACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCga                             <  2:205001/150‑1 (MQ=255)
                                                                                                                        ccAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAAcc                                                                                                                 >  1:232555/1‑62 (MQ=255)
                                                                                                                        ccAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAAcc                                                                                                                 <  2:232555/62‑1 (MQ=255)
                                                                                                                         cAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTg                                                                                                     >  1:471119/1‑73 (MQ=255)
                                                                                                                         cAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTg                                                                                                     <  2:471119/73‑1 (MQ=255)
                                                                                                                          aaaaGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAACACGGCACCTGTATCGCTGCGAGAACgt                       <  1:482973/150‑1 (MQ=255)
                                                                                                                           gctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGa                                                                                    >  2:194148‑M1/26‑88 (MQ=255)
                                                                                                                           gctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGa                                                                                    <  1:194148‑M1/63‑1 (MQ=255)
                                                                                                                            aaGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACgtgt                     <  1:538174/150‑1 (MQ=255)
                                                                                                                                     gcgcttgacagcccgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTAt                                                                                                             >  1:6470‑M1/16‑53 (MQ=255)
                                                                                                                                     gcgcttgacagcccgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTAt                                                                                                             <  2:6470‑M1/38‑1 (MQ=255)
                                                                                                                                      tctctTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGc                               >  3:278008/1‑130 (MQ=255)
                                                                                                                                      tctctTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGc                               <  4:278008/130‑1 (MQ=255)
                                                                                                                                       ctctTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGc          <  3:322383/150‑1 (MQ=255)
                                                                                                                                       ctctTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGc          <  4:39335/150‑1 (MQ=255)
                                                                                                                                        tctTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCTGACATGACCCCATGACCACTCGCTATCAACCCTACTCCGCCCCCTGTACCTCTTCTGGAACGTGTATCGATTTCGcc         >  3:389885/1‑150 (MQ=255)
                                                                                                                                          ttttATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACAt                                                                                 >  4:16647/1‑76 (MQ=255)
                                                                                                                                          ttttATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACAt                                                                                 <  3:16647/76‑1 (MQ=255)
                                                                                                                                          ttttATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCgg       >  4:139339/1‑150 (MQ=255)
                                                                                                                                              agcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGcc         <  4:20603‑M1/138‑1 (MQ=255)
                                                                                                                                              agcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGcc         >  3:20603‑M1/7‑144 (MQ=255)
                                                                                                                                              aTTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCaa                                                         <  1:596441/96‑1 (MQ=255)
                                                                                                                                              aTTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCaa                                                         >  2:596441/1‑96 (MQ=255)
                                                                                                                                               ttGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAg  <  3:409100/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                
GTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAG  >  NC_000913_3_pae_tpiA/1263502‑1263794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.