mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 37.2% | 136.1 / 132.3 | 137 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 123 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 4542598 = | 80 (0.770) | 29 (0.300) | 28/264 | 5.6 | 24.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | 4542912 = | 108 (1.110) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 81 (0.780) | 20 (0.210) | 20/264 | 7.9 | 17.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 108 (1.110) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4236141 | 104 (1.000) | 13 (0.130) | 12/262 | 11.1 | 12.1% | intergenic (+77/‑37) | yjbE/yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein |
| ? | NC_000913_3_pae_tpiA | = 4236145 | 93 (0.960) | intergenic (+81/‑33) | yjbE/yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3895233 | 89 (0.860) | 11 (0.120) | 10/258 | 11.9 | 11.6% | intergenic (+15/+39) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter |
| ? | NC_000913_3_pae_tpiA | = 3895244 | 86 (0.900) | intergenic (+26/+28) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1707027 | 99 (0.950) | 10 (0.100) | 10/262 | 12.1 | 9.8% | coding (109/2223 nt) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| ? | NC_000913_3_pae_tpiA | = 1707031 | 92 (0.950) | coding (113/2223 nt) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex | |||||
| * | ? | NC_000913_3_pae_tpiA | 4304491 = | 75 (0.720) | 11 (0.110) | 9/260 | 12.6 | 13.7% | intergenic (‑172/+37) | ytcA/yjcS | putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein |
| ? | NC_000913_3_pae_tpiA | 4304519 = | 70 (0.730) | intergenic (‑200/+9) | ytcA/yjcS | putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 3156579 = | 84 (0.810) | 9 (0.090) | 9/260 | 12.6 | 10.8% | intergenic (+61/‑44) | yqhD/dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| ? | NC_000913_3_pae_tpiA | 3156603 = | 71 (0.740) | intergenic (+85/‑20) | yqhD/dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A | |||||
| * | ? | NC_000913_3_pae_tpiA | 3470096 = | 121 (1.160) | 9 (0.090) | 9/262 | 12.7 | 7.5% | intergenic (‑243/+49) | chiA/tufA | periplasmic endochitinase/translation elongation factor EF‑Tu 1 |
| ? | NC_000913_3_pae_tpiA | 3470120 = | 110 (1.140) | intergenic (‑267/+25) | chiA/tufA | periplasmic endochitinase/translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913_3_pae_tpiA | 1417458 = | 99 (0.950) | 8 (0.080) | 8/262 | 13.2 | 8.0% | intergenic (‑72/+30) | recE/racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1417483 = | 92 (0.950) | intergenic (‑97/+5) | recE/racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 127602 | 122 (1.170) | 9 (0.090) | 8/266 | 13.4 | 7.1% | intergenic (+15/‑310) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase |
| ? | NC_000913_3_pae_tpiA | = 127606 | 120 (1.220) | intergenic (+19/‑306) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase | |||||