| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_pae_tpiA | 1,483,617 | Δ5 bp | coding (557‑561/3903 nt) | hrpA → | putative ATP‑dependent helicase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_pae_tpiA | 1483617 | 1483621 | 5 | 24 [0] | [0] 24 | hrpA | putative ATP‑dependent helicase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1483616 | 0 (0.000) | 24 (0.660) | 22/282 | 0.8 | 100% | coding (556/3903 nt) | hrpA | putative ATP‑dependent helicase |
| ? | NC_000913_3_pae_tpiA | 1483622 = | 0 (0.000) | coding (562/3903 nt) | hrpA | putative ATP‑dependent helicase | |||||
TGGCGAACCGTATTGCGGAAGAGCTGAAAACGGAGCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACT > NC_000913_3_pae_tpiA/1483473‑1483753 | tGGCGAACCGTATTGCGGAAGAGCTGAAAACGGAGCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgat > 1:597666‑M1/1‑144 (MQ=255) gAACCGTATTGCGGAAGAGCTGAAAACGGAGCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcag < 2:549881‑M1/149‑10 (MQ=255) ccGTATTGCGGAAGAGCTGAAAACGGAGCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcagtac > 1:405493‑M1/1‑137 (MQ=255) gCTGAAAACGGAGCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGCTCACGAAAGTGCACAAACGATGTACAACCTGATAACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcagtacgacactatcattatt < 2:547329‑M1/149‑28 (MQ=255) tGAAAACGGAGCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcagtacgacactatcattattga > 1:391995‑M1/1‑120 (MQ=255) tGAAAACGGAGCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcagtacgacactatcattattga > 1:616701‑M1/1‑120 (MQ=255) tGAAAACGGAGCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcagtacgacactatcattattga < 2:326413‑M1/149‑30 (MQ=255) gcaagacggagCCGGGCGGTTACATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcagtacgacactatcattattga < 2:30607‑M1/144‑30 (MQ=255) tGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcagtacgacactatcattattgacgaagcgcacgaacgcagcc < 2:405493‑M1/149‑50 (MQ=255) aTCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcagtacgacactatcattattgacgaagcgcacgaacgcagcctga > 1:101709‑M1/1‑97 (MQ=255) tCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcagtacgacactatcattattgacgaagggcacgaacgcagcctgaa > 1:295357‑M1/1‑96 (MQ=255) ttACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcagtacgacactatcattattgacgaagcgcacgaacgcagcctgaatatc < 1:202788‑M1/149‑58 (MQ=255) aaGTGATAACCTGGTGGTCATGCTGATCACCGACGGTATCCTGCAGGCGGAGATCCAGCAAGACCctgatgcagtactacactatcattattgacgaagcgcacgaacgcagcctgaatatcgattttttgctcggctatttgaaagag < 1:362663‑M1/149‑85 (MQ=255) tGAGAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcagtacgacactatcattattgacgaagcgcacgaacgcagcctgaatatcgattttttgctcggctatttgaaagagttg < 1:603117‑M1/149‑88 (MQ=255) acGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcagtacgacactatcattattgacgaagcgcacgaacgcagcctgaatatcgattttttgctcggctatttgaaagagttgctgccgc > 2:89199‑M1/1‑55 (MQ=255) cGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGGCCctgatgcagtacgaggctatgattattgacgaagcgcacgaacgcggcctgaatatcgattttttgctcggctttttggaggagttgctgccgag > 2:149427‑M1/1‑54 (MQ=255) gTCAAGAGGATGACGGACGGTATCCTGCTGCCGGAGATCCAGCAAGCCCctgatgcagtacgacactatcattattgacgaagcgcaggaacgcagcttgaatatcgattttttgctcggctatttgaaagagttgctgccgcggcgtc < 2:493170‑M1/149‑101 (MQ=255) tCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgcagtacgacactatcattattgacgaagcgcacgaacgcagcctgaatatcgattttttgctcggctatttgaaagagttgctgccgcggcgtcc > 1:387724‑M1/1‑48 (MQ=255) atgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCctgatgccgtacgacactatcattattgacgaagggcacgaacgcagcctgaatatcgattttttgctcggctatttgaaagagttgctgccgcggcgtcctgacctaa > 1:256743‑M1/1‑40 (MQ=255) ggTATCCTGCTGGCGGAGATCCAGCAAGACCgtgatgcagtaggacactatgattattgacgaggcgcacgaacgcagcctggatatcgattttttgctaggctttttgaaagagttggtgcagcggcgttctgaccttaaaatcatta > 2:28487‑M1/1‑31 (MQ=255) tgGCGGAGATCCAGCAAGACCctgatgcagtacgacactatcattattgacgaagcgcacgaacgcagcctgaatatcgattttttgctcggctatttgaaagagttgctgccgcggcgtcctgacctaaaaatcattatcacttccgc > 1:398094‑M1/1‑21 (MQ=255) ggAGATCCAGCAAGACCctgatgcagtacgacactatcattattgacgaagcgcacgaacgcagcctgaatatcgattttttgctcggctatttgaaagagttgctgccgcggcgtcctgacctaaaaatcattatcacttccgcgact > 2:474631‑M1/1‑17 (MQ=255) gaTCCAGCAAGACCctgatgcagtacgacactatcattattgacgaagcgcacgaacgcagcctgaatatcgattttttgctcggctatttgaaagagttgctgccgcggcgtcctgacctaaaaatcattatcacttccgcgactatc < 2:391995‑M1/149‑136 (MQ=255) tCCAGCAAGACCctgatgcagtacgacactatcattattgtcgaagcgcacgaacgcagcctgaatatcgattttttgctcggctatttgaaagagttgctgccgcggcgtcctgacctaaaaatcattatcacttccgcgactatcga < 2:231893‑M1/149‑138 (MQ=255) | TGGCGAACCGTATTGCGGAAGAGCTGAAAACGGAGCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACT > NC_000913_3_pae_tpiA/1483473‑1483753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |