| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_pae_tpiA | 1,483,617 | Δ5 bp | coding (557‑561/3903 nt) | hrpA → | putative ATP‑dependent helicase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_pae_tpiA | 1483617 | 1483621 | 5 | 24 [0] | [0] 24 | hrpA | putative ATP‑dependent helicase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1483616 | 0 (0.000) | 24 (0.660) | 22/282 | 0.8 | 100% | coding (556/3903 nt) | hrpA | putative ATP‑dependent helicase |
| ? | NC_000913_3_pae_tpiA | 1483622 = | 0 (0.000) | coding (562/3903 nt) | hrpA | putative ATP‑dependent helicase | |||||
AACCGTATTGCGGAAGAGCTGAAAACGGAGCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGA > NC_000913_3_pae_tpiA/1483478‑1483758 | tggcgaaccgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgtttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGAt > 1:597666‑M2/145‑149 (MQ=255) gaaccgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgtttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAg < 2:549881‑M2/9‑1 (MQ=255) ccgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgtttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAGTAc > 1:405493‑M2/138‑149 (MQ=255) gctgaaaacggagccgggcggttgcatcggttacaaagtgcgtttcagcgctcacgaaagtgcacaaacgatgtacaacctgataaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAGTACGACACTATCattatt < 2:547329‑M2/27‑1 (MQ=255) tgaaaacggagccgggcggttgcatcggttacaaagtgcgtttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAGTACGACACTATCATTATTGa > 1:391995‑M2/121‑149 (MQ=255) tgaaaacggagccgggcggttgcatcggttacaaagtgcgtttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAGTACGACACTATCATTATTGa > 1:616701‑M2/121‑149 (MQ=255) tgaaaacggagccgggcggttgcatcggttacaaagtgcgtttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAGTACGACACTATCATTATTGa < 2:326413‑M2/29‑1 (MQ=255) gcaagacggagccgggcggttacatcggttacaaagtgcgtttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAGTACGACACTATCATTATTGa < 2:30607‑M2/29‑1 (MQ=255) tgcatcggttacaaagtgcgtttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGcc < 2:405493‑M2/49‑1 (MQ=255) atcggttacaaagtgcgtttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGa > 1:101709‑M2/98‑149 (MQ=255) tcggttacaaagtgcgtttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAGTACGACACTATCATTATTGACGAAGGGCACGAACGCAGCCTGaa > 1:295357‑M2/97‑149 (MQ=255) ttacaaagtgcgtttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATc < 1:202788‑M2/57‑1 (MQ=255) aagtgataacctggtggtcatgctgatcaccgacggtatcctgcaggcggagatccagcaagaccCTGATGCAGTACTACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAagag < 1:362663‑M2/84‑1 (MQ=255) tgagaacacgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTtg < 1:603117‑M2/87‑1 (MQ=255) acgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCcgc > 2:89199‑M2/56‑149 (MQ=255) cgatggtcaagctgatgaccgacggtatcctgctggcggagatccagcaaggccCTGATGCAGTACGAGGCTATGATTATTGACGAAGCGCACGAACGCGGCCTGAATATCGATTTTTTGCTCGGCTTTTTGGAGGAGTTGCTgccgag > 2:149427‑M2/55‑147 (MQ=255) gtcaagaggatgacggacggtatcctgctgccggagatccagcaagcccCTGATGCAGTACGACACTATCATTATTGACGAAGCGCAGGAACGCAGCTTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTc < 2:493170‑M2/100‑1 (MQ=255) tcaagctgatgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTcc > 1:387724‑M2/49‑149 (MQ=255) atgaccgacggtatcctgctggcggagatccagcaagaccCTGATGCCGTACGACACTATCATTATTGACGAAGGGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTaa > 1:256743‑M2/41‑149 (MQ=255) ggtatcctgctggcggagatccagcaagaccGTGATGCAGTAGGACACTATGATTATTGACGAGGCGCACGAACGCAGCCTGGATATCGATTTTTTGCTAGGCTTTTTGAAAGAGTTGGTGCAGCGGCGTTCTGACCTTAAAATCATTa > 2:28487‑M2/32‑149 (MQ=255) tggcggagatccagcaagaccCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCcgc > 1:398094‑M2/22‑149 (MQ=255) ggagatccagcaagaccCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACt > 2:474631‑M2/18‑149 (MQ=255) gatccagcaagaccCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATc < 2:391995‑M2/135‑1 (MQ=255) tccagcaagaccCTGATGCAGTACGACACTATCATTATTGTCGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGa < 2:231893‑M2/137‑1 (MQ=255) | AACCGTATTGCGGAAGAGCTGAAAACGGAGCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGA > NC_000913_3_pae_tpiA/1483478‑1483758 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |