New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 4179572	44 (1.380)	5 (0.160)	5/272	3.6	12.2%	intergenic (+73/‑340)	rplA/rplJ	50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
	?	NC_000913_3_pae_tpiA	= 4179682	30 (0.980)					intergenic (+183/‑230)	rplA/rplJ	50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGAAAGTTAGCATCTCCACCACCATGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/4179423‑4179572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatccgTCGCTATTCAGCTTGTGACGGCGTTGGCTTCCTTCATTCGCACCAGTCACATAGTTAGCTATGCTCCTGGCGACTCACTCAGTTGCCGCCTTGCCACAACCCGAATATCTCGGATATACGTCTGCATTAAGCATTATACGTGG  <  NC_000913_3_pae_tpiA/4179682‑4179540                                                                                                                                                                                                                                                                                                       AGAAAGTTAGCATCTCCACCACCATGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCC                                                                                                                                                  <  2:345629/149‑1      GTTAGCATCTCCACCACCATGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGacat                                                                                                                                             >  2:44723/1‑145                                         AGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGTCGCTATTCAGCTTGTGACGGCGTTGGCTTCCTTCATTC                                                                                                          >  1:337961/1‑149                                                                         ACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGTCGCTATTCAGCTTGTGACGGCGTTGGCTTCCTTCATTCGCACCAGTCACATAGTTAGCTATGCTCCTGGC                                                                          >  2:152752/1‑149                                                                                                                  ACCCCCACGTATAATGCTTAATGCAGACGTATATCCGTCGCTATTCAGCTTGTGACGGCGTTGGCTTCCTTCATTCGCACCAGTCACATAGTTAGCTATGCTCCTGGCGACTCACTCAGTTGCCGCCTTGCCACAACCCGAATATCTCG                                 <  1:152752/149‑1                                                                                                                         CGTATAATGCTTAATGCAGACGTATATCCGTCGCTATTCTGCTTGTGACGGCGTTGGCTTCCTTCATTCGCACCAGTCACATAGTTAGCTATGCTCCTGGCGACTCTCTCAGTTGCCGCCTTGCCACAACCCGAATTTCTCGGATATAC                          <  1:290840/149‑1                                                                                                                           TATAATGCTTAATGCAGACGTATATCCGTCGCTATTCAGCTTGTGACGGCGTTGGCTTCCTTCATTCGCACCAGTCACATAGTTAGCTATGCTCCTGGCGACTCACTCAGTTGCCGCCTTGCCACAACCCGAATATCTCGGATATACGT                        <  2:337961/149‑1                                                                                                                                                 TATCCGTCGCTATTCAGCTTGTGACGGCGTTGGCTTCCTTCATTCGCACCAGTCACATAGTTAGCTATGCTCCTGGCGACTCACTCAGTTGCCGCCTTGCCACAACCCGAATATCTCGGATATACGTCTGCATTAAGCATTATACGTGG  <  1:202784/149‑1                                                                                                                                                                                                                                                                                                       AGAAAGTTAGCATCTCCACCACCATGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/4179423‑4179572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatccgTCGCTATTCAGCTTGTGACGGCGTTGGCTTCCTTCATTCGCACCAGTCACATAGTTAGCTATGCTCCTGGCGACTCACTCAGTTGCCGCCTTGCCACAACCCGAATATCTCGGATATACGTCTGCATTAAGCATTATACGTGG  <  NC_000913_3_pae_tpiA/4179682‑4179540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.