New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3777134	NA (NA)	6 (0.230)	4/264	3.3	NA	intergenic (+107/‑265)	yibL/lldP	ribosome‑associated DUF2810 family protein/L‑lactate permease
	?	NC_000913_3_pae_tpiA	= 3777146	NA (NA)					intergenic (+119/‑253)	yibL/lldP	ribosome‑associated DUF2810 family protein/L‑lactate permease
Rejected: Coverage evenness skew score above cutoff.

AAATGGGCCTGCAGGAGATGACTGGGTTTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3776981‑3777134 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagggcaatCCTCATCAGAGAATTGCCCTTAGGTTGTTGATCCAGAGCGCCTTATCTTGCCGGATGCGGCGTGAACACCTTACTCGGCCTATAGGAATGTGCAGAATCACCCTGTAGATACTGTGTTCTTAAAACGCGGTCTTTGAAAACCCAGTC  <  NC_000913_3_pae_tpiA/3777146‑3777000                                                                                                                                                                                                                                                                                                               AAATGGGCCTGCAGGAGATGACTGGGTTTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGG                                                                                                                                                          >  1:50972/1‑149                                                                              ATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATCCTCATCAGAGAATT                                                                                                                                      <  1:133878/92‑1                                                                              ATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATCCTCATCAGAGAATT                                                                                                                                      >  2:133878/1‑92                                                                                                        ACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATCCTCATCAGAGAATTGCCCTTA                                                                                                                               <  1:45424/73‑1                                                                                                        ACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATCCTCATCAGAGAATTGCCCTTA                                                                                                                               <  1:46057/73‑1                                                                                                        ACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATCCTCATCAGAGAATTGCCCTTA                                                                                                                               >  2:45424/1‑73                                                                                                        ACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATCCTCATCAGAGAATTGCCCTTA                                                                                                                               >  2:46057/1‑73                                                                                                                                                     GGCAATCCTCATCAGAGAATTGCCCTTAGGTTGTTGATCCAGAGCGCCTTATCTTGCCGGATGCGGCGTGAACACCTTACTCGGCCTATAGGAATGTGCAGAATCACCCTGTAGATACTGTGTTCTTAAAACGCGGTCTTTGAACACCC      >  1:97623/1‑149                                                                                                                                                      GCAATCCTCATCAGAGAATTGCCCTTAGGTTGTTGATCCAGAGCGCCTTATCTTGCCGGATGCGGCGTGAACACCTTACTCGGCCTATAGGAATGTGCAGAATCACCCTGTAGATACTGTGTTCTTAAAACGCGGTCTTTGAAAACCCA     >  2:234946/1‑149                                                                                                                                                         ATCCTCATCAGAGAATTGCCCTTAGGTTGTTGATCCAGAGCGCCTTATCTTGCCGGATGCGGCGTGAACACCTTACTCGGCCTATAGGAATGTGCAGAATCACCCTGTAGATACTGTGTTCTTAAAACGCGGTCTTTGAAAACCCAGTC  <  2:2388/149‑1                                                                                                                                                                                                                                                                                                               AAATGGGCCTGCAGGAGATGACTGGGTTTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3776981‑3777134 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagggcaatCCTCATCAGAGAATTGCCCTTAGGTTGTTGATCCAGAGCGCCTTATCTTGCCGGATGCGGCGTGAACACCTTACTCGGCCTATAGGAATGTGCAGAATCACCCTGTAGATACTGTGTTCTTAAAACGCGGTCTTTGAAAACCCAGTC  <  NC_000913_3_pae_tpiA/3777146‑3777000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.