New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3777134	NA (NA)	6 (0.230)	4/264	3.3	NA	intergenic (+107/‑265)	yibL/lldP	ribosome‑associated DUF2810 family protein/L‑lactate permease
	?	NC_000913_3_pae_tpiA	= 3777146	NA (NA)					intergenic (+119/‑253)	yibL/lldP	ribosome‑associated DUF2810 family protein/L‑lactate permease
Rejected: Coverage evenness skew score above cutoff.

GACTGGGTTTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTG  >  NC_000913_3_pae_tpiA/3777000‑3777289                                                                                                                                                   |                                                                                                                                                gACTGGGTTTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGAt                                                                                                                                               >  2:2388/1‑149 (MQ=255)    tGGGTTTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGc                                                                                                                                            <  2:234946/149‑1 (MQ=255)     gggTGTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGcc                                                                                                                                           <  1:97623/149‑1 (MQ=255)                  ccGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCa                                                                                                                              >  1:158342/1‑149 (MQ=255)                   cgcgGTTTAAGAACACAGTATCTACAGGGGGAATCTGCACATTCCTATAGGCCGAGTAAGGTGTTAACGCAGCAGCCGACCAGATAAGGCGCTCTGGATCAACAACCTACGGCCCATCCTCTTACGCGGATAGCCCTTTGCttacccgc                                                                                                                             >  2:247296/1‑143 (MQ=255)                    gcgTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGGCATTTTCTTTACCAGa                                                                                                                            >  1:159841/1‑149 (MQ=255)                      gTTTTAAGAAGACATGAGCTACAGGCTGATTTTGCACATTCCCATAGGCCGAGTAAGGTGTTCAGGCCGCACCCGGCAAGAGAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCCGATTAGGATTGCCCTTTTCTTTACCAGACa                                                                                                                          <  2:110056/149‑1 (MQ=255)                           actaaCTCAGTATCTGCAGTGTGATTCTGCAGCTTCCTATAGGCGCAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGTTCAACAACCTAAGGGCAAGTTTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTcc                                                                                                                     <  2:458070/146‑1 (MQ=255)                                 acaGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCcac                                                                                                               >  2:445507/1‑149 (MQ=255)                                   aGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACaa                                                                                                             >  1:56745/1‑149 (MQ=255)                                              ggTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTGTTTACCAGACATCCCCCCCCCAAAGAATTGGCCCt                                                                                                  >  1:253036/1‑149 (MQ=255)                                                  aTTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGa                                                                                                                            <  1:163286/119‑1 (MQ=255)                                                  aTTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGa                                                                                                                            >  2:163286/1‑119 (MQ=255)                                                        cacaTTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACACAAATTGGCCCTACCAAttctt                                                                                        >  1:150638/1‑149 (MQ=255)                                                           aTTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGACGCAACTTGCCCGTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGc                                                                                     >  1:117104/1‑149 (MQ=255)                                                               cTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTAt                                                                                 <  2:50972/149‑1 (MQ=255)                                                                        gAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACctct                                                                        >  1:462432/1‑149 (MQ=255)                                                                          gTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCcac                                                                                                               >  2:154917/1‑108 (MQ=255)                                                                          gTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCcac                                                                                                               <  1:154917/108‑1 (MQ=255)                                                                           tAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCT‑CCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGtt                                                                    >  1:373354/1‑149 (MQ=255)                                                                               gtgtTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTcac                                                                 >  1:495971/1‑149 (MQ=255)                                                                                tgtTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTcaca                                                                >  1:284461/1‑149 (MQ=255)                                                                                   tCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCT‑CCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAAttt                                                            <  2:373354/149‑1 (MQ=255)                                                                                    cACGGCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACGTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCATAAGAATTGGCCGTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAAttt                                                            <  2:244702/149‑1 (MQ=255)                                                                                     aCGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATCCTCATCAGAGAATTGCCCtta                                                                                                                                       <  1:46057/73‑2 (MQ=18)                                                                                       gccgcATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTccc                                                         >  2:403411/1‑149 (MQ=255)                                                                                         cgcATCCGGCAAGATAAGGCGATCTGGACAAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCCGACCTCTCCCCCCCCAAGAATAGGCCCTACCAATTCTTCGCTTATCTGACCTCTGCTTCACCATTTCCCaa                                                       <  2:121520/149‑1 (MQ=255)                                                                                          gcATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAAt                                                      <  1:113775/149‑1 (MQ=255)                                                                                               cGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTaaaa                                                 >  1:50917/1‑149 (MQ=255)                                                                                               cGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGAAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGCATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTaaaa                                                 <  2:226801/149‑1 (MQ=255)                                                                                                   aaGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTca                                             <  2:158342/149‑1 (MQ=255)                                                                                                   aaGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTATTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTca                                             >  1:223698/1‑149 (MQ=255)                                                                                                               tctGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTCACATCAATGTTGc                                 <  2:463585/149‑1 (MQ=255)                                                                                                                 tGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTCACATCAATGTTGCCa                               >  2:431713/1‑149 (MQ=255)                                                                                                                         caacCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAAttcttc                                                                                       <  1:13794/85‑1 (MQ=255)                                                                                                                         caacCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAAttcttc                                                                                       >  2:13794/1‑85 (MQ=255)                                                                                                                             cTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTCACATCAATGTTGCCAATCCATAACAtt                   >  2:113261/1‑149 (MQ=255)                                                                                                                                       ttCTCTGATTAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACca         <  1:127588/149‑1 (MQ=255)                                                                                                                                              atgaGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTCACATCGATGTTTCCAATACATAACATTTAATTAGCCATTCATTg  >  2:190837/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                GACTGGGTTTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTG  >  NC_000913_3_pae_tpiA/3777000‑3777289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.