New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3777134	NA (NA)	6 (0.230)	4/264	3.3	NA	intergenic (+107/‑265)	yibL/lldP	ribosome‑associated DUF2810 family protein/L‑lactate permease
	?	NC_000913_3_pae_tpiA	= 3777146	NA (NA)					intergenic (+119/‑253)	yibL/lldP	ribosome‑associated DUF2810 family protein/L‑lactate permease
Rejected: Coverage evenness skew score above cutoff.

TGCAGGAGATGACTGGGTTTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCA  >  NC_000913_3_pae_tpiA/3776990‑3777282                                                                                                                                                 |                                                                                                                                                     tGCAGGAGATGACTGGGTTTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATtctc                                                                                                                                                  <  1:289621/149‑1 (MQ=255)           gACTGGGTTTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGAt                                                                                                                                        >  2:2388/1‑149 (MQ=255)              tGGGTTTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGc                                                                                                                                     <  2:234946/149‑1 (MQ=255)               gggTGTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGcc                                                                                                                                    <  1:97623/149‑1 (MQ=255)                            ccGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCa                                                                                                                       >  1:158342/1‑149 (MQ=255)                             cgcgGTTTAAGAACACAGTATCTACAGGGGGAATCTGCACATTCCTATAGGCCGAGTAAGGTGTTAACGCAGCAGCCGACCAGATAAGGCGCTCTGGATCAACAACCTACGGCCCATCCTCTTACGCGGATAGCCCTTTGCttacccgc                                                                                                                      >  2:247296/1‑143 (MQ=255)                              gcgTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGGCATTTTCTTTACCAGa                                                                                                                     >  1:159841/1‑149 (MQ=255)                                gTTTTAAGAAGACATGAGCTACAGGCTGATTTTGCACATTCCCATAGGCCGAGTAAGGTGTTCAGGCCGCACCCGGCAAGAGAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCCGATTAGGATTGCCCTTTTCTTTACCAGACa                                                                                                                   <  2:110056/149‑1 (MQ=255)                                     actaaCTCAGTATCTGCAGTGTGATTCTGCAGCTTCCTATAGGCGCAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGTTCAACAACCTAAGGGCAAGTTTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTcc                                                                                                              <  2:458070/146‑1 (MQ=255)                                           acaGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCcac                                                                                                        >  2:445507/1‑149 (MQ=255)                                             aGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACaa                                                                                                      >  1:56745/1‑149 (MQ=255)                                                        ggTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTGTTTACCAGACATCCCCCCCCCAAAGAATTGGCCCt                                                                                           >  1:253036/1‑149 (MQ=255)                                                            aTTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGa                                                                                                                     <  1:163286/119‑1 (MQ=255)                                                            aTTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGa                                                                                                                     >  2:163286/1‑119 (MQ=255)                                                                  cacaTTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACACAAATTGGCCCTACCAAttctt                                                                                 >  1:150638/1‑149 (MQ=255)                                                                     aTTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGACGCAACTTGCCCGTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGc                                                                              >  1:117104/1‑149 (MQ=255)                                                                         cTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTAt                                                                          <  2:50972/149‑1 (MQ=255)                                                                          tataGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCtgat                                                                                                                                              <  1:158233/80‑1 (MQ=255)                                                                          tataGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCtgat                                                                                                                                              >  2:158233/1‑80 (MQ=255)                                                                                  gAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACctct                                                                 >  1:462432/1‑149 (MQ=255)                                                                                    gTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCcac                                                                                                        <  1:154917/108‑1 (MQ=255)                                                                                    gTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCcac                                                                                                        >  2:154917/1‑108 (MQ=255)                                                                                     tAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCT‑CCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGtt                                                             >  1:373354/1‑149 (MQ=255)                                                                                         gtgtTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTcac                                                          >  1:495971/1‑149 (MQ=255)                                                                                          tgtTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTcaca                                                         >  1:284461/1‑149 (MQ=255)                                                                                             tCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCT‑CCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAAttt                                                     <  2:373354/149‑1 (MQ=255)                                                                                              cACGGCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACGTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCATAAGAATTGGCCGTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAAttt                                                     <  2:244702/149‑1 (MQ=255)                                                                                               aCGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATCCTCATCAGAGAATTGCCCtta                                                                                                                                <  1:46057/73‑2 (MQ=18)                                                                                                 gccgcATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTccc                                                  >  2:403411/1‑149 (MQ=255)                                                                                                   cgcATCCGGCAAGATAAGGCGATCTGGACAAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCCGACCTCTCCCCCCCCAAGAATAGGCCCTACCAATTCTTCGCTTATCTGACCTCTGCTTCACCATTTCCCaa                                                <  2:121520/149‑1 (MQ=255)                                                                                                    gcATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAAt                                               <  1:113775/149‑1 (MQ=255)                                                                                                         cGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTaaaa                                          >  1:50917/1‑149 (MQ=255)                                                                                                         cGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGAAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGCATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTaaaa                                          <  2:226801/149‑1 (MQ=255)                                                                                                             aaGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTca                                      <  2:158342/149‑1 (MQ=255)                                                                                                             aaGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTATTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTca                                      >  1:223698/1‑149 (MQ=255)                                                                                                                         tctGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTCACATCAATGTTGc                          <  2:463585/149‑1 (MQ=255)                                                                                                                           tGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTCACATCAATGTTGCCa                        >  2:431713/1‑149 (MQ=255)                                                                                                                                   caacCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAAttcttc                                                                                <  1:13794/85‑1 (MQ=255)                                                                                                                                   caacCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAAttcttc                                                                                >  2:13794/1‑85 (MQ=255)                                                                                                                                       cTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTCACATCAATGTTGCCAATCCATAACAtt            >  2:113261/1‑149 (MQ=255)                                                                                                                                                 ttCTCTGATTAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACca  <  1:127588/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TGCAGGAGATGACTGGGTTTTCAAAGACCGCGTTTTAAGAACACAGTATCTACAGGGTGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGCATCCGGCAAGATAAGGCGCTCTGGATCAACAACCTAAGGGCAATTCTCTGATGAGGATTGCCCTTTTCTTTACCAGACATCTCCCCCCACAAGAATTGGCCCTACCAATTCTTCGCTTATCTGACCTCTGGTTCACAATTTCCCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCA  >  NC_000913_3_pae_tpiA/3776990‑3777282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.