New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 4042456	39 (1.180)	5 (0.160)	4/268	4.2	14.0%	coding (42/987 nt)	srkA	Cpx stress response Thr/Ser protein kinase; MazF antagonist protein
	?	NC_000913_3_pae_tpiA	= 4042486	25 (0.810)					coding (72/987 nt)	srkA	Cpx stress response Thr/Ser protein kinase; MazF antagonist protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCGTGTCTATCAATTTCAGGACGAAGATCGTCGACGTTTTGTCGTCAAATTTTATCGCCCTGAACGTTG  >  NC_000913_3_pae_tpiA/4042317‑4042599                                                                                                                                            |                                                                                                                                                tCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATg                                                                                                                                        >  2:477818/1‑149 (MQ=255)    cggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACTAAAATCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGAc                                                                                                                                     <  1:192087/149‑1 (MQ=255)    cagcgTAATTAAAGAGTAAACGCTTGTAAGCGCCGCCACCAAAATCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGAc                                                                                                                                     <  1:47189/147‑1 (MQ=255)       cgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGCACGct                                                                                                                                  >  2:218695/1‑149 (MQ=255)         tAATTAAAGAGTAAAAGCTTGTAAGCGGCGGCACCAAAATCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGctct                                                                                                                                <  2:303909/149‑1 (MQ=255)          aaTTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGCCACTCCACCCGGATACCATCATGGACGctcgg                                                                                                                               >  1:214476/1‑147 (MQ=255)           aTTAAAGAGTAAAAGCTTGTAAGCGGATCCACCAAAGTCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGACGACGGGATGAATAACAGCGCTGTTACTTTCCAGACACTACCCCCGGATACCATCATGGACGCTCTGt                                                                                                                              <  1:25168/149‑1 (MQ=255)               aaGAGTAAAAGGTTGGAAGCCGCGCCACCAAAATCATCCTGAAATGGTAGCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACTGCGCTTTTACTTTCCAGACACTACACTCGGATACCATCATGGACGCTCTGTTTGa                                                                                                                          <  2:36267/149‑1 (MQ=255)                agagTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAg                                                                                                                         <  2:180017/149‑1 (MQ=255)                    tAAAAGCTTGTAAGCGGCGCCACCAAAATCATCATGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACCACACCCGGATACCATCATGGACGCTCTGTTTGAGCATg                                                                                                                     <  1:481318/149‑1 (MQ=255)                    tAAAAGCGTGTAAGCGGCGCCACGAAAATCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCTGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATg                                                                                                                     <  2:561472/149‑1 (MQ=255)                           ttGTAAGCGGCGCCACCAAAATCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCg                                                                                                              >  1:326830/1‑149 (MQ=255)                           ttGTAAGCGGCGCCACCAAAACCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCg                                                                                                              <  1:15173/149‑1 (MQ=255)                               aaGCGGCGCCACCAAAATCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTg                                                                                                          <  2:301942/149‑1 (MQ=255)                                    gcgcCACCAAAATCATCGTGAAATGATATCCCTCGTCATGCGTAATGATTTCCGGATGATGGGATGAATAACCGCGCTTTTACTTTCCAGACACTCAACCCGGATACCATCATGGATCTCCTGTCTGCGCATGGGCCCCCGCTGGATTc                                                                                                     >  2:235997/1‑149 (MQ=255)                                                       gAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAAc                                                                                  <  2:326830/149‑1 (MQ=255)                                                             atatCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACCCCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTAt                                                                            <  1:444303/149‑1 (MQ=255)                                                                tCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGATTTTACTTTCCAGACACTACACCCGGGTACCATCATGGACGCTCTGTTTGAGCATGGGATCAGAGTGGATTCCAGTCTTACCCCGCTTAACCGATATgca                                                                         >  2:251810/1‑147 (MQ=255)                                                                    tCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAAcc                                                                     <  2:192731/149‑1 (MQ=255)                                                                     ccgaatccGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGAGGCTGTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCg                                                                    <  1:161170/142‑1 (MQ=255)                                                                           tCGTAATGTTTTCCGGATGATGGGATGAATAAGAGCGCTTTTACTTTCCAGTCACTCCACTCGGATATCATCATGGACGCTCTGTTTGTGGATGGGATCCGGGGGGATTCCGGTCTTACCCCGCTTAACAGCTATGAACACCGTGTCTa                                                              <  2:207289/149‑1 (MQ=255)                                                                            cGTAATGTTTTCCGGAGGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGGTCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCGTGTCTAt                                                             <  2:437369/149‑1 (MQ=255)                                                                              tAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTATTACCCCGCTTAACGGCTATGCAAACAGTGTCTATCa                                                           >  1:562425/1‑149 (MQ=255)                                                                                     ttCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCGTGTCTATCAATTTCAg                                                    <  1:313987/149‑1 (MQ=255)                                                                                                  gATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCgg                                                                                                             <  1:43921/79‑1 (MQ=255)                                                                                                  gATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCgg                                                                                                             >  2:43921/1‑79 (MQ=255)                                                                                                         aaCAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGc                                                                               >  2:394938/1‑102 (MQ=255)                                                                                                         aaCAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGc                                                                               <  1:394938/102‑1 (MQ=255)                                                                                                             gcgcTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACCGCTATGAAAACCGTGTCTATCAATTTCAGGACGAAGATCGTCGACGTTTTgtc                            <  1:376261/149‑1 (MQ=255)                                                                                                             gcgcTTGTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCGTGTCTATCAATTTCAGGACGAAGATCGTCGACGTTTTgtc                            <  1:89960/149‑1 (MQ=255)                                                                                                              cgcTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCGTGTCTATCAATTTCAGGACGAAGATCGTCGACGTTTTgtcg                           <  2:154045/149‑1 (MQ=255)                                                                                                               gcTTTTACTTTCCAGACACTACACCCGGGTACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCGTGTCTATCAATTTCAGGACGAAGATCGTCGACGTTTTgtcgt                          <  2:138201/149‑1 (MQ=255)                                                                                                                            aaacagTAAACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATACGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCGTGTCTATCAATTTCAGGACGAAGATCGTCGACGTTTTGTCGTCAAATTTTATCGc             <  2:214476/147‑1 (MQ=255)                                                                                                                            aGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCGTGTCTATCAATTTCAGGACGAAGATCGTCGACGTTTTGTCGTCAAATTTTATCGc             >  2:68574/1‑149 (MQ=255)                                                                                                                             gACACTACACCCGGATACCATGATGGTCGCTCTGTTTGAGCATGCGGTTCGTGTGGATTCCGGTCTTACCCCGCGTAACAGCTATTAAAACCGTGTCTATCAATTTCAGGACGAAGATCGTCGACGTTTTGTCGTCAAATTTTATCGcc            <  2:399890/149‑1 (MQ=255)                                                                                                                                acTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCGTGTCTATCAATTTCAGGACGAAGATCGTCGACGTTTTGTCGTCAAATTTTATCGCCCTg         >  2:135919/1‑149 (MQ=255)                                                                                                                                  tACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCGTGTCTATCAATTTCAGGACGAAGATCGTCGACGTTTTGTCGTCAAATTTTATCGCCCTGaa       >  1:525981/1‑149 (MQ=255)                                                                                                                                       cgggATACCAGCATGGACGCTCTGGTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCGTGTCTATCAATTTCAGGACGAAGATCGTCGACGTTTTGTCGTCAAATTTTATCGCCCTGAACGTTg  <  2:551344/147‑1 (MQ=255)                                                                                                                                       ccGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCGTGTCTATCAATTTCAGGACGAAGATCGTCGACGTTTTGTCGTCAAATTTTATCGCCCTGAACGTTg  <  1:68574/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                TCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTCTGTTTGAGCATGGGATCCGGGTGGATTCCGGTCTTACCCCGCTTAACAGCTATGAAAACCGTGTCTATCAATTTCAGGACGAAGATCGTCGACGTTTTGTCGTCAAATTTTATCGCCCTGAACGTTG  >  NC_000913_3_pae_tpiA/4042317‑4042599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.