mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 28.7% | 216.8 / 107.0 | 143 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 375 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 79 (0.710) | 35 (0.360) | 33/242 | 4.5 | 31.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 82 (0.840) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1207805 | 80 (0.720) | 32 (0.330) | 29/242 | 5.4 | 29.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 1209602 | 81 (0.830) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1446357 | 101 (0.910) | 15 (0.160) | 15/238 | 9.8 | 14.6% | intergenic (+151/+21) | ydbL/feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| ? | NC_000913_3_pae_tpiA | = 1446362 | 88 (0.920) | intergenic (+156/+16) | ydbL/feaR | DUF1318 family protein/transcriptional activator for tynA and feaB | |||||
| * | ? | NC_000913_3_pae_tpiA | 1672789 = | 114 (1.030) | 17 (0.170) | 16/254 | 10.1 | 14.1% | intergenic (+8/+31) | ydgD/mdtI | putative peptidase/multidrug efflux system transporter |
| ? | NC_000913_3_pae_tpiA | 1672815 = | 101 (0.990) | intergenic (+34/+5) | ydgD/mdtI | putative peptidase/multidrug efflux system transporter | |||||
| * | ? | NC_000913_3_pae_tpiA | 2729955 = | NA (NA) | 22 (0.210) | 16/262 | 10.4 | NA | noncoding (1203/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_pae_tpiA | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 224973 | 40 (0.360) | 22 (0.210) | 16/262 | 10.4 | 36.5% | noncoding (1203/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 225275 | NA (NA) | 24 (0.220) | 17/274 | 10.5 | NA | noncoding (1505/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | = 225299 | NA (NA) | noncoding (1529/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4040683 | 185 (1.670) | 28 (0.260) | 16/270 | 10.7 | 17.2% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_tpiA | = 4213078 | 87 (0.800) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 4542598 = | 107 (0.970) | 14 (0.140) | 14/256 | 11.0 | 11.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | 4542912 = | 114 (1.100) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1217114 | 111 (1.000) | 15 (0.150) | 13/244 | 11.0 | 13.2% | intergenic (+118/‑214) | ymgC/ycgG | Blue light, low temperature and stress induced protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913_3_pae_tpiA | = 1217120 | 99 (1.010) | intergenic (+124/‑208) | ymgC/ycgG | Blue light, low temperature and stress induced protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase | |||||