New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202486342 (0.080)709 (0.160) 114/252 18.1 65.9% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 391 (0.090)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 924 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAAT  >  CP016816/202359‑202610
                                                                                                                                  |                                                                                                                               
aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAAATTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAATCCCCtt                                                                                                                                 <  2:2548509/128‑1 (MQ=255)
aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAAAACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAATCCCCtt                                                                                                                                 <  1:2453398/128‑1 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAA‑AT‑AAAAAAAAAACAATCCCCtta                                                                                                                                >  2:7573327/1‑127 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAATCCCCtta                                                                                                                                >  1:7364265/1‑127 (MQ=255)
         aaaTAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTATATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAATCCACttaaaaattaa                                                                                                                        >  2:5051090/1‑119 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAAACACCtt‑‑‑aa‑‑aaat‑aaaaa                                                                                                                >  2:9435654/1‑128 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAAAAATACCC‑‑Ttaaa‑‑aatt‑aaaa                                                                                                                 >  2:483881/1‑128 (MQ=255)
            taataGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAA‑AT‑AAAAAAAAAAAAATCCC‑‑ATaaaa‑‑aaat‑aaaaa                                                                                                                >  2:9126588/1‑128 (MQ=255)
             aataGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGATTATCATCACAA‑AT‑AAAAAAAAAACAAACCAC‑‑‑TAAA‑‑AAAT‑aaaaaaa                                                                                                              >  2:8945195/1‑128 (MQ=255)
                agagTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATTTAGATCCTCTTGATCTATATTTTTATTTTTTAATCTTCACAA‑AT‑AAAAAAAAAACAAAACCATAaaaaa‑‑aaaa‑aaaaaaa                                                                                                              >  2:5219978/1‑128 (MQ=255)
                  acttaattttaatttaAAAAAAAA‑AAAATTAAAAATTAATAAAATTTATATACTAGTTATATATTTTTTTAATTTTTTAATTTAACAA‑AT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AAAT‑aaaaaaaaaaa                                                                                                          <  1:3369827/120‑1 (MQ=255)
                   gTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTAGATTATATTCACAA‑AT‑AAAAAAAAAACAAACACCTaaaaaa‑‑aaaa‑aaaaaaaaaa                                                                                                           >  2:1255763/1‑128 (MQ=255)
                    tttaattttattaaAAAAACATAAAAATTAAAAATTTTTAAAATTTTAATCCTCTTCTTCTTTTTTTTTTTTTTTTTATATTCAAAA‑AA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaa                                                                                                         <  1:858475/119‑1 (MQ=255)
                    ttAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAATCCCCTTAAAAA‑‑TTAT‑aaaaaaaaaaa                                                                                                          >  2:8657213/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTATATCTTCAAAA‑AA‑AAAAAAAAAACAATCACC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaa                                                                                                       >  1:5092560/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTAACAA‑AT‑AAAAAAAAAACAAACACATT‑‑‑AA‑‑AAAT‑aaaaaaaaaaaaaaa                                                                                                      >  2:3309106/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCAT‑AAACTAAATAATTCTTATAATGTAGATACTCGTGATCTATTTATATAATTGTTTATCTTAACAA‑AT‑AAAAAAAAAACAAAAAC‑‑ATAAAA‑‑AAAT‑aaaaaaaaaaaaaa                                                                                                       >  2:1917056/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATATGTTTATATTCACAA‑AT‑AAAAAAAAAAAAATAAC‑‑‑ATAAA‑‑AAAT‑aaaaaaaaaaaaaaaa                                                                                                     >  2:4406007/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAAACCCC‑‑‑TAAA‑‑AAAT‑taaaaaaaaaaaaaaa                                                                                                     >  1:4268890/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTCACAA‑AT‑AAAAAAAAAACAAACCACATaaaaa‑‑aaaa‑aaaaaaaaaaaaa                                                                                                        >  1:7940908/1‑128 (MQ=255)
                        gtttaataaaAAAAACAT‑AATATTAAAAAATATTAAAATTTATAACCAAGTTATATATTTTTTTATTTTTTTATATAAAAAA‑AA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AAAT‑aaaaaaaaaaaaaaaaa                                                                                                    <  1:634245/126‑1 (MQ=255)
                        ggTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCAAAA‑AT‑AAAAAAAAAACAATCACAAT‑‑‑AA‑‑AAAT‑aaaaaaaaaaaaaaaaaa                                                                                                   >  2:4156431/1‑128 (MQ=255)
                        ggTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAAAAATAAAC‑‑TAAAA‑‑AAAT‑aaaaaaaaaaaaaaaaa                                                                                                    >  2:729582/1‑128 (MQ=255)
                        ggTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAGTATATCTTCACAA‑AT‑AAAAAAAAAAAAAAACC‑‑‑ATAAA‑‑AAAT‑taaaaaaaaaaaaaaaaa                                                                                                   >  1:8727735/1‑128 (MQ=255)
                        ggTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTATTTATCTTCACAA‑AT‑AAAAAAAAAACAATCAAATT‑‑‑AA‑‑AAAT‑aaaaaaaaaaaaaaaaaa                                                                                                   >  1:2932058/1‑128 (MQ=255)
                        ggTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAAACACC‑‑‑TAAA‑‑AAAT‑aaaaaaaaaaaaaaaaaa                                                                                                   >  2:463070/1‑128 (MQ=255)
                          tatattaaAATAACAA‑AAAATTAAATATTATTAAAATTTAATTACTCGTGATATATTTTTTTATTTTTTTATATTCAAAA‑AA‑AAAAAAAAAAAAATCCCC‑‑ATAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaa                                                                                                  <  1:5464566/125‑1 (MQ=255)
                           taattaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAA‑AT‑AAAAAAAAAA‑AATCACCATAAAAA‑‑Taaa‑aaaaaaaaaaaaaaaaaaa                                                                                                  >  2:2934136/1‑128 (MQ=255)
                           taattaaAAAACAAT‑AAACTTAATAATTCTTATAATAAAGATAATCCTTATCTATTTTATAATAAATTTAAAATAAAAA‑AT‑AAAAAAAAAAAAAACAAC‑‑‑AAAA‑‑AAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:5669663/1‑128 (MQ=255)
                            aattaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAATCCAC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:2356655/1‑128 (MQ=255)
                             attaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAATCCCATTAAAAA‑‑TAaa‑aaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:832102/1‑128 (MQ=255)
                             attaaAAAAAAAT‑AAAATTAATAAATTATAAAATTTATATACTATTTTTTTATTTTTTTATTTTTTTATATTAAAAA‑AA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AAAT‑aaaaaaaaaaaaaaaaaaacta                                                                                               <  1:7297052/128‑4 (MQ=255)
                              ttaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTTCACAA‑AT‑AAAAAAAAAACAAACCC‑‑ATAAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:343727/1‑126 (MQ=255)
                              ttaaAATACCAT‑AAAATTAATAATTATTATAATTTATATACTCGTGATATATTTTTTTATTTTTTTATCTTCACAA‑AA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaactaaa                                                                                              <  1:8508824/128‑6 (MQ=255)
                                 aaaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTAGTATATCTTCACAA‑AT‑AAAAAAAAAACAATCACCTTAAAAA‑‑Taaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  1:6622494/1‑125 (MQ=255)
                                 aaaTACAAT‑AAAATTAATAATTATTATAATCTATATCCTCGTTATCTATTTTTTTATTTTTTTATATTAACAA‑AA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaactaaaaa                                                                                           <  1:4138855/128‑8 (MQ=255)
                                  aaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAATAA‑AAAAAAAACACAAACCCC‑‑‑TAAA‑‑AAAT‑aaaaaaaaaaaaaaaaaaaacaaaaaa                                                                                          >  2:8071916/1‑121 (MQ=255)
                                  aaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑ATAAAAAAAAAAACAATCCAC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:8157795/1‑123 (MQ=255)
                                  aaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAATCCC‑‑ATTAAA‑‑AATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:7176682/1‑128 (MQ=255)
                                  aaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTAATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAAACACC‑‑TTAAA‑‑AATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:7588225/1‑128 (MQ=255)
                                  aaTAACAT‑AAAATTATTAAATATTATAATTTATATAAACTTTTTTTTTTTTTTTATTTTTTTAAATAAAAAA‑AA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                          <  1:7759912/128‑1 (MQ=255)
                                   ataaaaT‑AAAATTTATAATTTTTTTAAACTATATACTCGTTATATTTTTTTTTTTTTTTTTATAATTAAAA‑AA‑AAAAAAAAAAAAAACCCC‑‑ATAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                         <  1:8097534/123‑1 (MQ=255)
                                   ataaaaT‑AAAATTAATAATTATTATAATTTATATCCTATTTATCTATTTTTTTATTTTTTTATATTAAAAA‑AT‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                       <  1:9272677/123‑1 (MQ=255)
                                   aaaCCAT‑AAACTTAATAAATATTAAAATTTATATCCTCGTGATCTATTTTTTTATTTGTTTATATTAAAAA‑AA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaactaaaaacaa                                                                                         <  2:317977/126‑11 (MQ=255)
                                    tACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaataaaaaaaa                                                                                        >  1:1161026/1‑119 (MQ=255)
                                      aaaT‑AAACTTATATATTCTTATAATTTATATCATCTTTTTCTTTTTTTTTATTTTTATATATTAAAAA‑AT‑AAAAAAAAAAAAAATCCC‑CTTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                       <  1:271781/126‑1 (MQ=255)
                                         t‑AAAATTAATAATTATTAAAATTTATATACACGTTATATATTTTTTTTTTTTTTTATATTAAAAA‑AT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                <  1:8414503/128‑1 (MQ=255)
                                           aaaattaaaaattaTTATAATTTAAAACCACGTTATTTATTTTTTTATTTGTTTAAAATAAAAA‑AT‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑‑AAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                               <  1:2090173/128‑1 (MQ=255)
                                            aaattataaatTATTATAATGTATATCATCCTGATATATTTTTTTATTTGTTTATATAAACAA‑AA‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                <  1:8189443/120‑1 (MQ=255)
                                            aaattAATAATAATAAAAATGTATATACTCTTTTTCTATTTTTTTATTTTTTTATATTAAAAA‑AA‑AAAAAAAAAACAATACCC‑‑TTAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                <  1:463070/125‑1 (MQ=255)
                                                              atttAGATACTCGTTTTCTTTTTTTTTATTTGTTTATATTAACAA‑AT‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                            <  1:8246127/125‑1 (MQ=255)
                                                                gtttttcatatcgATTTATTTTTTTTTTTTTTTTTATTATACA‑AT‑AAAAAAAAAAAAATTCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAATCTCTATTTCTTAAAATTCCCtatt                                                             <  2:6349180/116‑1 (MQ=255)
                                                                 tAGATCCTCTTTTTTTATTTTTTTTTTTGTTTAACTTCAAAA‑AA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                          <  1:5944989/128‑1 (MQ=255)
                                                                  atatccaggTGATTTATTTTTTTTATTGTTTATTTTCAAAA‑AA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                         <  1:4826609/120‑1 (MQ=255)
                                                                   gATCATCGTGTTATATTTTTTTATTTTTTTATATTAAAAA‑AA‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                        <  2:7364265/128‑1 (MQ=255)
                                                                    ttactagttttttATTTTTTTTTTTTTTTAAATTAACAA‑AA‑AAAAAAAAAAAAATCCCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                          <  1:3079865/116‑1 (MQ=255)
                                                                     tatttttgttttATTTTTTTTTTTTTTTATTTTTAAAA‑AT‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                      <  2:879644/117‑1 (MQ=255)
                                                                     tCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACAAAAAACAAAATCAATTTATAAAAATTACAGATTATACca                                                       >  2:858231/1‑128 (MQ=255)
                                                                      actctTGATATATTTTTTTATTTTTTTTATATAAAAA‑AA‑AAAAAAAAAAAAATACCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                        <  1:6156563/127‑1 (MQ=255)
                                                                       ctagttattattttttttatttttttaTTTTAAAAA‑AT‑AAAAAAAAAAAAATACCC‑TTAAAA‑‑ATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                       <  2:7420557/117‑1 (MQ=255)
                                                                        tatttatatatttttttattttttTAATTTAAAAA‑AA‑AAAAAAAAAAAAATACCATAAAAAA‑‑TTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                       <  1:2567539/120‑1 (MQ=255)
                                                                        actagATCTATTTTTTTATTTTTTTATAATAACAA‑AT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                   <  1:8638425/124‑1 (MQ=255)
                                                                        aatttttatATTTTTTTTTTTTTTTAAATTAAAAA‑AA‑AAAAAAAAAAAAAACCCCATAAAAATTAAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                         <  1:176494/120‑1 (MQ=255)
                                                                        aagttttCTATTTTTTTTTTTTTTTATATTAAAAA‑AT‑AAAAAAAAAACAATACCCTTT‑‑AA‑‑AAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                   <  1:7455879/122‑1 (MQ=255)
                                                                         ttttttatatttttttattttttTATATAAAAAA‑AT‑AAAAAAAAAA‑AATTCCC‑‑TTAAA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                  <  1:1351131/121‑1 (MQ=255)
                                                                         ttttttatATTTTTTTTTTTTTTTATTATTAAAA‑AA‑AAAAAAAAAAAAATACCATT‑‑‑AA‑‑AAAT‑‑TTAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                  <  2:4959630/121‑1 (MQ=255)
                                                                         agtgataattttttttATTTGTTTATATTCAAAA‑AA‑AAAAAAAAAACAATCCCCAT‑‑‑AA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                  <  2:6243426/119‑1 (MQ=255)
                                                                          ttgataatattttttATTTTTTTAACTTAAAAA‑AA‑AAAAAAAAAAAAAACACATT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                  <  1:950554/119‑1 (MQ=255)
                                                                           ttttatatttttttattttttTTATTTTAAAA‑AT‑AAAAAAAAAAAAATACCCTTT‑‑‑A‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                <  2:949014/123‑1 (MQ=255)
                                                                           ttttatatttttttattttttTATCTTAACAA‑AT‑AAAAAAAAAAAAAACCCC‑‑ATAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                  <  2:8304243/123‑1 (MQ=255)
                                                                           ttatattttttttttttttttttttttAAAAA‑AA‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                <  2:2207713/121‑1 (MQ=255)
                                                                            tttatatttttttattttttTAACTTAAAAA‑AT‑‑AAAAAAAAACAAAACCC‑ATAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                 <  1:1026212/124‑1 (MQ=255)
                                                                              ttttttttttttttttttttTATTTAAAA‑AA‑AAAAAAAAAAAATTATAATTAAAAA‑‑TTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTATAATTCCCTATTATACCAAatttt                                                 <  2:3737039/124‑1 (MQ=255)
                                                                               atttttatttaTTTTTATATATTAAAAA‑AT‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑‑AAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                            <  1:3846473/125‑1 (MQ=255)
                                                                                tATTTTTTTATTTGTTTATCTTCAAAA‑AT‑AAAAAAAAAA‑AATACC‑‑ATTAAA‑‑AAAT‑‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                         <  1:523466/128‑1 (MQ=255)
                                                                                 atttttttatttttttTTTTTAAAAA‑AA‑AAAAAAAAAACAATACCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                            <  1:3578474/128‑1 (MQ=255)
                                                                                 attttttattttttTTATTATAAAAA‑AT‑AAAAAAAAAAAAAACCCATT‑‑‑AA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                           <  1:9013580/128‑1 (MQ=255)
                                                                                  ttttttttttttttTATATTTAAAA‑AA‑AAAAAAAAAAAAAACACC‑ATAAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                            <  2:9580700/128‑1 (MQ=255)
                                                                                    tttttATTTTTTTAAAATAAAAA‑AA‑AAAAAAAAAAAAAAACACA‑‑TAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                          <  2:7890177/128‑1 (MQ=255)
                                                                                     ttttATTTTTTTAAAATAAAAA‑AA‑AAAAAAAAAAAAAAACCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                         <  1:4491687/128‑1 (MQ=255)
                                                                                       tttttttttTATCATAAAAA‑AA‑AAAAAAAAAAAAATACCATT‑‑‑AA‑‑AAAT‑T‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                   <  1:3219007/125‑1 (MQ=255)
                                                                                       ttATTTTTTTAAATTAAAAA‑AA‑AAAAAAAAAAAAAACCCCATAAAAA‑‑ATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                        <  1:7836105/128‑1 (MQ=255)
                                                                                        ttattGTTTAACTTAAAAA‑AA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                   <  2:1098591/125‑1 (MQ=255)
                                                                                           ttttttATATTAAAAA‑AT‑AAAAAAAAAACAATCACC‑‑TTAAA‑‑AAAT‑‑‑‑‑AAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                              <  1:6883124/125‑1 (MQ=255)
                                                                                              ttttaatttaaaa‑aT‑TAAAAAAAAAAAAAACACTTTAAAA‑‑TTTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                                 <  1:1503894/117‑1 (MQ=255)
                                                                                              tttATCTTCACAA‑AT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAAAAAAATCTATTATATAAAATTCCATATTAAACCACAATTTATTTTATAAATAAAatatag                             >  2:9313436/1‑126 (MQ=255)
                                                                                              tttATCTTCACAA‑AT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAACAAA‑‑AAAAAAAAA‑‑ATATTAAAAAAAATTCCATATAAAACAAAATTTTATTTTTaaaaataaataataaa                           >  2:7993681/1‑116 (MQ=255)
                                                                                               ttaaattaataa‑aa‑aaaaaaaaaaaaATACCC‑‑TTAAA‑‑AAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                            <  2:7718121/118‑1 (MQ=255)
                                                                                                tatattaaaaa‑aa‑aaaaaaaaaaaaATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                             <  1:7702064/119‑1 (MQ=255)
                                                                                                tATCTTCACAA‑AT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATCTATTTGTTAAAATTCACATATATACCACATTTAAATTTTAAAAAAATATAttcaa                           >  1:8770494/1‑125 (MQ=255)
                                                                                                aatcaacaaaa‑aT‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                           <  1:9130833/119‑1 (MQ=255)
                                                                                                 aaaaaaaaaa‑aT‑AAAAAAAAAAAAATCACCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                          <  1:8868806/120‑1 (MQ=255)
                                                                                                  taataaaaa‑aT‑AAAAAAAAAAAAATACAATT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                          <  1:4405866/121‑1 (MQ=255)
                                                                                                    ttaacaA‑AA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                         <  1:9576780/125‑1 (MQ=255)
                                                                                                     tCACAA‑AT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAAAAAAAACTAATAATTAAAATAACCTATTATACAAAATTTTTTTTTTAAAA‑AAAATAttttaaataa                      >  1:9417273/1‑120 (MQ=255)
                                                                                                        aaa‑aT‑AAAAAAAAAATAATTCC‑‑TTTAAA‑‑TATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                     <  1:229845/127‑1 (MQ=255)
                                                                                                         aa‑aT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAA‑‑‑TAAAAAAAAAATATATTTATTTAAATTAAATATTATAAAAAATTTTATTTTTAAATTAATATATTTAAAtattattttt                >  1:5730128/1‑124 (MQ=255)
                                                                                                            aaaaaaaaaaaaaaaaaCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                   <  1:7192350/125‑1 (MQ=255)
                                                                                                                      aaaCAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAACCGGTTTTTTTTAAAATTCCGAATTAAACCCAATTTTTTTTTTAAAAAAAGATATTTACTAAATATATATATAatatat       >  2:8429060/1‑128 (MQ=255)
                                                                                                                       aaCAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAAAATATTTATAAAAATTACAATATAAAAAAAATTTTATTTTAAAAATAATATATTAAAATAatatataaataaaaaat       >  1:7250336/1‑118 (MQ=255)
                                                                                                                                  |                                                                                                                               
AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAA‑AT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAAT  >  CP016816/202359‑202610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.