New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202486342 (0.080)709 (0.160) 114/252 18.1 65.9% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 391 (0.090)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 924 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAAT  >  CP016816/202359‑202610
                                                                                                                                  |                                                                                                                               
aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAAATTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                                 <  2:2548509/128‑1 (MQ=255)
aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAAAACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                                 <  1:2453398/128‑1 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                                >  2:7573327/1‑127 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                                >  1:7364265/1‑127 (MQ=255)
         aaaTAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCACttaaaaattaa                                                                                                                        >  2:5051090/1‑119 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACACCtt‑‑‑aa‑‑aaataaaaa                                                                                                                >  2:9435654/1‑128 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATACCC‑‑Ttaaa‑‑aattaaaa                                                                                                                 >  2:483881/1‑128 (MQ=255)
            taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAATCCC‑‑ATaaaa‑‑aaataaaaa                                                                                                                >  2:9126588/1‑128 (MQ=255)
             aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGATTATCATCACAAATAAAAAAAAAACAAACCAC‑‑‑TAAA‑‑AAATaaaaaaa                                                                                                              >  2:8945195/1‑128 (MQ=255)
                agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCTTGATCTATATTTTTATTTTTTAATCTTCACAAATAAAAAAAAAACAAAACCATAaaaaa‑‑aaaaaaaaaaa                                                                                                              >  2:5219978/1‑128 (MQ=255)
                  acttaattttaatttaAAAAAAAAAAAATTAAAAATTAATAAAATTTATATACTAGTTATATATTTTTTTAATTTTTTAATTTAACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AAATaaaaaaaaaaa                                                                                                          <  1:3369827/120‑1 (MQ=255)
                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTAGATTATATTCACAAATAAAAAAAAAACAAACACCTaaaaaa‑‑aaaaaaaaaaaaaa                                                                                                           >  2:1255763/1‑128 (MQ=255)
                    tttaattttattaaAAAAACATAAAAATTAAAAATTTTTAAAATTTTAATCCTCTTCTTCTTTTTTTTTTTTTTTTTATATTCAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaa                                                                                                         <  1:858475/119‑1 (MQ=255)
                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTAAAAA‑‑TTATaaaaaaaaaaa                                                                                                          >  2:8657213/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTATATCTTCAAAAAAAAAAAAAAAACAATCACC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaa                                                                                                       >  1:5092560/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTAACAAATAAAAAAAAAACAAACACATT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaa                                                                                                      >  2:3309106/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTAAATAATTCTTATAATGTAGATACTCGTGATCTATTTATATAATTGTTTATCTTAACAAATAAAAAAAAAACAAAAAC‑‑ATAAAA‑‑AAATaaaaaaaaaaaaaa                                                                                                       >  2:1917056/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATATGTTTATATTCACAAATAAAAAAAAAAAAATAAC‑‑‑ATAAA‑‑AAATaaaaaaaaaaaaaaaa                                                                                                     >  2:4406007/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑‑TAAA‑‑AAATtaaaaaaaaaaaaaaa                                                                                                     >  1:4268890/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTCACAAATAAAAAAAAAACAAACCACATaaaaa‑‑aaaaaaaaaaaaaaaaa                                                                                                        >  1:7940908/1‑128 (MQ=255)
                        gtttaataaaAAAAACATAATATTAAAAAATATTAAAATTTATAACCAAGTTATATATTTTTTTATTTTTTTATATAAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AAATaaaaaaaaaaaaaaaaa                                                                                                    <  1:634245/126‑1 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAACAATCACAAT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaaaa                                                                                                   >  2:4156431/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATAAAC‑‑TAAAA‑‑AAATaaaaaaaaaaaaaaaaa                                                                                                    >  2:729582/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAGTATATCTTCACAAATAAAAAAAAAAAAAAACC‑‑‑ATAAA‑‑AAATtaaaaaaaaaaaaaaaaa                                                                                                   >  1:8727735/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTATTTATCTTCACAAATAAAAAAAAAACAATCAAATT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaaaa                                                                                                   >  1:2932058/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACACC‑‑‑TAAA‑‑AAATaaaaaaaaaaaaaaaaaa                                                                                                   >  2:463070/1‑128 (MQ=255)
                          tatattaaAATAACAAAAAATTAAATATTATTAAAATTTAATTACTCGTGATATATTTTTTTATTTTTTTATATTCAAAAAAAAAAAAAAAAAAATCCCC‑‑ATAAA‑‑AATTaaaaaaaaaaaaaaaaaaa                                                                                                  <  1:5464566/125‑1 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAATCACCATAAAAA‑‑Taaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:2934136/1‑128 (MQ=255)
                           taattaaAAAACAATAAACTTAATAATTCTTATAATAAAGATAATCCTTATCTATTTTATAATAAATTTAAAATAAAAAATAAAAAAAAAAAAAACAAC‑‑‑AAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:5669663/1‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCAC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:2356655/1‑128 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCATTAAAAA‑‑TAaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:832102/1‑128 (MQ=255)
                             attaaAAAAAAATAAAATTAATAAATTATAAAATTTATATACTATTTTTTTATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AAATaaaaaaaaaaaaaaaaaaacta                                                                                               <  1:7297052/128‑4 (MQ=255)
                              ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTTCACAAATAAAAAAAAAACAAACCC‑‑ATAAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:343727/1‑126 (MQ=255)
                              ttaaAATACCATAAAATTAATAATTATTATAATTTATATACTCGTGATATATTTTTTTATTTTTTTATCTTCACAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaactaaa                                                                                              <  1:8508824/128‑6 (MQ=255)
                                 aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTAGTATATCTTCACAAATAAAAAAAAAACAATCACCTTAAAAA‑‑Taaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  1:6622494/1‑125 (MQ=255)
                                 aaaTACAATAAAATTAATAATTATTATAATCTATATCCTCGTTATCTATTTTTTTATTTTTTTATATTAACAAAAAAAAAAAAAACAAACCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaactaaaaa                                                                                           <  1:4138855/128‑8 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAATAAAAAAAAAACACAAACCCC‑‑‑TAAA‑‑AAATaaaaaaaaaaaaaaaaaaaacaaaaaa                                                                                          >  2:8071916/1‑121 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCAC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:8157795/1‑123 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑ATTAAA‑‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:7176682/1‑128 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTAATTTGTTTATCTTCACAAATAAAAAAAAAACAAACACC‑‑TTAAA‑‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:7588225/1‑128 (MQ=255)
                                  aaTAACATAAAATTATTAAATATTATAATTTATATAAACTTTTTTTTTTTTTTTATTTTTTTAAATAAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                          <  1:7759912/128‑1 (MQ=255)
                                   ataaaaTAAAATTTATAATTTTTTTAAACTATATACTCGTTATATTTTTTTTTTTTTTTTTATAATTAAAAAAAAAAAAAAAAAAAACCCC‑‑ATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                         <  1:8097534/123‑1 (MQ=255)
                                   ataaaaTAAAATTAATAATTATTATAATTTATATCCTATTTATCTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAACAAACCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                       <  1:9272677/123‑1 (MQ=255)
                                   aaaCCATAAACTTAATAAATATTAAAATTTATATCCTCGTGATCTATTTTTTTATTTGTTTATATTAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaactaaaaacaa                                                                                         <  2:317977/126‑11 (MQ=255)
                                    tACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaataaaaaaaa                                                                                        >  1:1161026/1‑119 (MQ=255)
                                      aaaTAAACTTATATATTCTTATAATTTATATCATCTTTTTCTTTTTTTTTATTTTTATATATTAAAAAATAAAAAAAAAAAAAATCCCCTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                       <  1:271781/126‑1 (MQ=255)
                                         tAAAATTAATAATTATTAAAATTTATATACACGTTATATATTTTTTTTTTTTTTTATATTAAAAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                <  1:8414503/128‑1 (MQ=255)
                                           aaaattaaaaattaTTATAATTTAAAACCACGTTATTTATTTTTTTATTTGTTTAAAATAAAAAATAAAAAAAAAAAAAACCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                               <  1:2090173/128‑1 (MQ=255)
                                            aaattataaatTATTATAATGTATATCATCCTGATATATTTTTTTATTTGTTTATATAAACAAAAAAAAAAAAAACAAACCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                <  1:8189443/120‑1 (MQ=255)
                                            aaattAATAATAATAAAAATGTATATACTCTTTTTCTATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAACAATACCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                <  1:463070/125‑1 (MQ=255)
                                                              atttAGATACTCGTTTTCTTTTTTTTTATTTGTTTATATTAACAAATAAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                            <  1:8246127/125‑1 (MQ=255)
                                                                gtttttcatatcgATTTATTTTTTTTTTTTTTTTTATTATACAATAAAAAAAAAAAAATTCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAATCTCTATTTCTTAAAATTCCCtatt                                                             <  2:6349180/116‑1 (MQ=255)
                                                                 tAGATCCTCTTTTTTTATTTTTTTTTTTGTTTAACTTCAAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                          <  1:5944989/128‑1 (MQ=255)
                                                                  atatccaggTGATTTATTTTTTTTATTGTTTATTTTCAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                         <  1:4826609/120‑1 (MQ=255)
                                                                   gATCATCGTGTTATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                        <  2:7364265/128‑1 (MQ=255)
                                                                    ttactagttttttATTTTTTTTTTTTTTTAAATTAACAAAAAAAAAAAAAAAAATCCCCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                          <  1:3079865/116‑1 (MQ=255)
                                                                     tatttttgttttATTTTTTTTTTTTTTTATTTTTAAAAATAAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                      <  2:879644/117‑1 (MQ=255)
                                                                     tCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACAAAAAACAAAATCAATTTATAAAAATTACAGATTATACca                                                       >  2:858231/1‑128 (MQ=255)
                                                                      actctTGATATATTTTTTTATTTTTTTTATATAAAAAAAAAAAAAAAAAAAATACCCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                        <  1:6156563/127‑1 (MQ=255)
                                                                       ctagttattattttttttatttttttaTTTTAAAAAATAAAAAAAAAAAAATACCCTTAAAA‑‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                       <  2:7420557/117‑1 (MQ=255)
                                                                        tatttatatatttttttattttttTAATTTAAAAAAAAAAAAAAAAAAAATACCATAAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                       <  1:2567539/120‑1 (MQ=255)
                                                                        actagATCTATTTTTTTATTTTTTTATAATAACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                   <  1:8638425/124‑1 (MQ=255)
                                                                        aatttttatATTTTTTTTTTTTTTTAAATTAAAAAAAAAAAAAAAAAAAAACCCCATAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                         <  1:176494/120‑1 (MQ=255)
                                                                        aagttttCTATTTTTTTTTTTTTTTATATTAAAAAATAAAAAAAAAACAATACCCTTT‑‑AA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                   <  1:7455879/122‑1 (MQ=255)
                                                                         ttttttatatttttttattttttTATATAAAAAAATAAAAAAAAAAAATTCCC‑‑TTAAA‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                  <  1:1351131/121‑1 (MQ=255)
                                                                         ttttttatATTTTTTTTTTTTTTTATTATTAAAAAAAAAAAAAAAAAAATACCATT‑‑‑AA‑‑AAATTTAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                  <  2:4959630/121‑1 (MQ=255)
                                                                         agtgataattttttttATTTGTTTATATTCAAAAAAAAAAAAAAAACAATCCCCAT‑‑‑AA‑‑AAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                  <  2:6243426/119‑1 (MQ=255)
                                                                          ttgataatattttttATTTTTTTAACTTAAAAAAAAAAAAAAAAAAAAACACATT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                  <  1:950554/119‑1 (MQ=255)
                                                                           ttttatatttttttattttttTTATTTTAAAAATAAAAAAAAAAAAATACCCTTT‑‑‑A‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                <  2:949014/123‑1 (MQ=255)
                                                                           ttttatatttttttattttttTATCTTAACAAATAAAAAAAAAAAAAACCCC‑‑ATAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                  <  2:8304243/123‑1 (MQ=255)
                                                                           ttatattttttttttttttttttttttAAAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                <  2:2207713/121‑1 (MQ=255)
                                                                            tttatatttttttattttttTAACTTAAAAAATAAAAAAAAACAAAACCCATAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                 <  1:1026212/124‑1 (MQ=255)
                                                                              ttttttttttttttttttttTATTTAAAAAAAAAAAAAAAAAATTATAATTAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTATAATTCCCTATTATACCAAatttt                                                 <  2:3737039/124‑1 (MQ=255)
                                                                               atttttatttaTTTTTATATATTAAAAAATAAAAAAAAAAAAAAACCC‑‑TTAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                            <  1:3846473/125‑1 (MQ=255)
                                                                                tATTTTTTTATTTGTTTATCTTCAAAAATAAAAAAAAAAAATACC‑‑ATTAAA‑‑AAAT‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                         <  1:523466/128‑1 (MQ=255)
                                                                                 atttttttatttttttTTTTTAAAAAAAAAAAAAAAAACAATACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                            <  1:3578474/128‑1 (MQ=255)
                                                                                 attttttattttttTTATTATAAAAAATAAAAAAAAAAAAAACCCATT‑‑‑AA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                           <  1:9013580/128‑1 (MQ=255)
                                                                                  ttttttttttttttTATATTTAAAAAAAAAAAAAAAAAAAACACCATAAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                            <  2:9580700/128‑1 (MQ=255)
                                                                                    tttttATTTTTTTAAAATAAAAAAAAAAAAAAAAAAAAAACACA‑‑TAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                          <  2:7890177/128‑1 (MQ=255)
                                                                                     ttttATTTTTTTAAAATAAAAAAAAAAAAAAAAAAAAAACCCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                         <  1:4491687/128‑1 (MQ=255)
                                                                                       tttttttttTATCATAAAAAAAAAAAAAAAAAAAATACCATT‑‑‑AA‑‑AAATT‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                   <  1:3219007/125‑1 (MQ=255)
                                                                                       ttATTTTTTTAAATTAAAAAAAAAAAAAAAAAAAAACCCCATAAAAA‑‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                        <  1:7836105/128‑1 (MQ=255)
                                                                                        ttattGTTTAACTTAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                   <  2:1098591/125‑1 (MQ=255)
                                                                                           ttttttATATTAAAAAATAAAAAAAAAACAATCACC‑‑TTAAA‑‑AAAT‑‑‑‑AAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                              <  1:6883124/125‑1 (MQ=255)
                                                                                              ttttaatttaaaaaTTAAAAAAAAAAAAAACACTTTAAAA‑‑TTTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                                 <  1:1503894/117‑1 (MQ=255)
                                                                                              tttATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAAAAAAAAATCTATTATATAAAATTCCATATTAAACCACAATTTATTTTATAAATAAAatatag                             >  2:9313436/1‑126 (MQ=255)
                                                                                              tttATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAACAAA‑‑AAAAAAAAA‑‑ATATTAAAAAAAATTCCATATAAAACAAAATTTTATTTTTaaaaataaataataaa                           >  2:7993681/1‑116 (MQ=255)
                                                                                               ttaaattaataaaaaaaaaaaaaaaaATACCC‑‑TTAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                            <  2:7718121/118‑1 (MQ=255)
                                                                                                tatattaaaaaaaaaaaaaaaaaaaATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                             <  1:7702064/119‑1 (MQ=255)
                                                                                                tATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAATAAAAAAAAAATCTATTTGTTAAAATTCACATATATACCACATTTAAATTTTAAAAAAATATAttcaa                           >  1:8770494/1‑125 (MQ=255)
                                                                                                aatcaacaaaaaTAAAAAAAAAACAAACCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                           <  1:9130833/119‑1 (MQ=255)
                                                                                                 aaaaaaaaaaaTAAAAAAAAAAAAATCACCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                          <  1:8868806/120‑1 (MQ=255)
                                                                                                  taataaaaaaTAAAAAAAAAAAAATACAATT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                          <  1:4405866/121‑1 (MQ=255)
                                                                                                    ttaacaAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                         <  1:9576780/125‑1 (MQ=255)
                                                                                                     tCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAAAAAAAACTAATAATTAAAATAACCTATTATACAAAATTTTTTTTTTAAAAAAAATAttttaaataa                      >  1:9417273/1‑120 (MQ=255)
                                                                                                        aaaaTAAAAAAAAAATAATTCC‑‑TTTAAA‑‑TATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                     <  1:229845/127‑1 (MQ=255)
                                                                                                         aaaTAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAA‑‑‑TAAAAAAAAAATATATTTATTTAAATTAAATATTATAAAAAATTTTATTTTTAAATTAATATATTTAAAtattattttt                >  1:5730128/1‑124 (MQ=255)
                                                                                                            aaaaaaaaaaaaaaaaaCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                   <  1:7192350/125‑1 (MQ=255)
                                                                                                                      aaaCAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAACCGGTTTTTTTTAAAATTCCGAATTAAACCCAATTTTTTTTTTAAAAAAAGATATTTACTAAATATATATATAatatat       >  2:8429060/1‑128 (MQ=255)
                                                                                                                       aaCAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAATAAAAACAAAAAATATTTATAAAAATTACAATATAAAAAAAATTTTATTTTAAAAATAATATATTAAAATAatatataaataaaaaat       >  1:7250336/1‑118 (MQ=255)
                                                                                                                                  |                                                                                                                               
AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAAT  >  CP016816/202359‑202610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.