New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202486342 (0.080)709 (0.160) 114/252 18.1 65.9% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 391 (0.090)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 964 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATT  >  CP016816/202369‑202618
                                                                                                                          |                                                                                                                                  
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGCTCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑Ttaaaa‑tat‑aaaa                                                                                                                         >  2:8609081/1‑128 (MQ=255)
   aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAAC‑‑Ttaaaa‑att‑aaaaaa                                                                                                                       >  1:3345986/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAAACAATAAC‑‑‑ATAAAA‑AAT‑aaaaaaaaa                                                                                                                    >  2:4197613/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCAAAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑ATAAAA‑AAT‑aaaaaaaa                                                                                                                     >  2:7600894/1‑128 (MQ=255)
      agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACCC‑‑AAAAAA‑AAT‑aaaaaaaaa                                                                                                                    >  2:6082849/1‑128 (MQ=255)
      agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACCC‑‑‑ATAAAA‑AAT‑aaaaaaaaaa                                                                                                                   >  1:9574471/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAA‑AAT‑taaaaaaaaaaaaa                                                                                                               >  2:8677554/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa                                                                                                                >  1:7875427/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAACAATCAC‑‑‑ATAAAA‑AAT‑taaaaaaaaaaaaa                                                                                                               >  2:886139/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTAAATAATTCTTATAATGTATATAATAATAATCTATTATATTAATAATTTATCATAACAAAT‑AAAAAAAAAAAAA‑‑ACCAATAAAAA‑AAT‑aaaaaaaaaaaaa                                                                                                                >  2:3335287/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATACTTATAATGTACATCCTCGTGATCTATTATTTTATATGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑ATAAAA‑ATT‑aaaaaaaaaaaaaa                                                                                                               >  2:8097660/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaa                                                                                                              >  2:7945990/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAA‑AAT‑taaaaaaaaaaaaaaa                                                                                                             >  2:1211332/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATAC‑‑‑AATAAAA‑AAT‑taaaaaaaaaaaaaaa                                                                                                             >  2:3214696/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCAC‑‑ATTAAAA‑ATT‑aaaaaaaaaaaaaaa                                                                                                              >  1:7277164/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACC‑‑‑AATAAAA‑AAT‑aaaaaaaaaaaaaaaa                                                                                                             >  1:3547589/1‑128 (MQ=255)
             atgTTAATTAAAAAAAAATAAAATTAATAATTATAAAAATGTATATACTCTTTATCTATTTTTTTATTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaa                                                                                                             <  1:9402183/126‑1 (MQ=255)
              ttttaattaaAAAACCATAAACTTAAAAAATATTATAATTTAAAAAAATGTTATATATTTTTTTATTTTTTTATAATAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaa                                                                                                            <  1:801100/126‑1 (MQ=255)
              tgtaaattaaAAAACAAAAAAATAAAAAATT‑TTATAATTTTTTTACTCGTGTTCTTTTTTTTTATTTTTTTTTATTTAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAAAA‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                           <  2:2118858/124‑1 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTCACAAAT‑AAAAAAAAAACAATCCAC‑‑ATAAAA‑ATT‑aaaaaaaaaaaaaaaaa                                                                                                            >  2:6344218/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaa                                                                                                             >  2:7809937/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaa                                                                                                            >  1:8109831/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaa                                                                                                            >  2:1063111/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAA‑AAT‑taaaaaaaaaaaaaaaaa                                                                                                           >  2:5004300/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACC‑‑‑TAAAA‑AAT‑aaaaaaaaaaaaaaaaaa                                                                                                           >  2:4491687/1‑128 (MQ=255)
               tttaattaaAAAAAAATAAATATAAAAATTTATTTAATTTATATACTTTTTTTTTTTTTTTTTTTTTTTTTATTTTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                           <  2:9463212/127‑1 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACATTAAAAAT‑aaa‑aaaaaaaaaaaaaaaaaaa                                                                                                          >  1:9033554/1‑128 (MQ=255)
                  aattaaAATACAATAAAATTAATAATTTTTAAAATTTATATACTATTTTTTTATTTTTTTTTTTTTTTATTTTTAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaac                                                                                                        <  2:3446408/128‑2 (MQ=255)
                     taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCAC‑‑TAAAAA‑AAT‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  2:1746107/1‑125 (MQ=255)
                      aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑ATAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:4714516/1‑124 (MQ=255)
                      aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACC‑‑TAAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  1:2475419/1‑124 (MQ=255)
                      aaaaTACCATAAACTTAATAAATCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCCTTAAAAAT‑aaa‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:536669/1‑126 (MQ=255)
                        aaaaaattAAAATTAATAAATATTATAATTTATATCATTTTTTTCTATTTTTTTATATTTTTATATTAACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                                 <  1:4625334/121‑1 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAA‑ATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:7176682/1‑128 (MQ=255)
                             cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaaataaaattta                                                                                             >  2:9042443/1‑117 (MQ=255)
                               tAAACTTAATAATTATTATAATTTATATCCTCTTTATATATTTTTTTATTTGTTTATCATAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAAct                                                                                           <  1:8403937/128‑1 (MQ=255)
                                  aaataatatatattAAAATTTATATACTCGTTATATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                        <  1:9132514/116‑1 (MQ=255)
                                   cTTAATAATTCTTATAATGTAGATCCTCGTGAACTATTTTTTTATTTGTTTATATTAACAAAT‑AAAAAAAAAACAAACAAC‑‑TTAAAA‑ATT‑AAAAAAAATATAAAAAAAAAAATAAaaaaaaacatata                                                                                       >  2:2339707/1‑123 (MQ=255)
                                   ataaattatTATTATAATTTATATACTCGTTTTTTATTTTTTTATTTTTTTATTTTTAAAAATAAAAAAAAAAACAATACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                        <  1:7537008/125‑1 (MQ=255)
                                     taataaTTTTTATAATGTAGATCCTCTTTTTATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                                  <  2:9243721/128‑1 (MQ=255)
                                      aattatTTTTATAATCTATTAACTCGGTATCTATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAACAATACCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                                     <  1:4461447/128‑1 (MQ=255)
                                        taatTATTATAATTTATATCCTCTTTTTTTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAA‑AATCCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                               <  1:5729116/128‑1 (MQ=255)
                                           ttCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCAT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAAC‑AAAAAAAAACTAAAtttaaattaaa                                                                             >  2:4859861/1‑120 (MQ=255)
                                              ttataaattttaTCCTTGTTATTTATTTTTTTATTTTTTTATATAAACAAAA‑AAAAAAAAAACAAACCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                             <  1:7782878/117‑1 (MQ=255)
                                                ataATTTATATCATAGTTATATTTTTTTTTATTTTTTAATATAAAAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTc                                                                           <  1:7622227/128‑1 (MQ=255)
                                                   atttatatactctTGATATATTTTTTATTTTTTTAATAATAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                                        <  1:659182/119‑1 (MQ=255)
                                                      tAGATCCTCTTTTTTTATTTTTTTTTTTGTTTAACTTCAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                  <  1:5944989/128‑1 (MQ=255)
                                                      tAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACAATATGTATTAACATTcccatttaa                                                                   >  2:957242/1‑122 (MQ=255)
                                                       atatccaggTGATTTATTTTTTTTATTGTTTATTTTCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑AAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                 <  1:4826609/120‑1 (MQ=255)
                                                        taTCCTCTTTATATATTTTTTTATTTTTTTTAAATCACAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                 <  1:8478946/127‑1 (MQ=255)
                                                         tttcttgttttttATTTTTTTTTTTTTTTATTTTTAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAA‑AAT‑TTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                <  2:9363937/116‑1 (MQ=255)
                                                         atcatgtttttgtATTTTTTTTTTTTTTTTTTTTAAAAAAA‑AAAAAAAAAACAATCCCATT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                               <  1:4391211/116‑1 (MQ=255)
                                                          aaatatttatatatttttttattttttTATATTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                               <  1:4250086/117‑1 (MQ=255)
                                                           tctagtttttttttttttttttttttTATTTTCAAAAAT‑AAAAAAAAAAAAATTACCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                              <  2:8321074/116‑1 (MQ=255)
                                                           actctTGATATATTTTTTTATTTTTTTTATATAAAAAAA‑AAAAAAAAAAAAATACCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                <  1:6156563/127‑1 (MQ=255)
                                                            atttgttattATTTTTTTTTTTATTTATTTTTAAAAAT‑AAAATAAAAAAAAATAAC‑TTAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                               <  1:7239417/119‑1 (MQ=255)
                                                            atcttttataatttttttatttttttAAAATAAAAAAA‑AAAAAAAAAAAAAAACCCATAAAAAATAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                 <  1:2577267/118‑1 (MQ=255)
                                                             tctttaTCTTTTTTTTTATTTTTTTATAATAAAAAAA‑AAAAAAAAAAAAATACC‑‑ATTAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                             <  1:8892014/123‑1 (MQ=255)
                                                              ctttttttatttttttattttttTAATTTAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                           <  1:7731394/121‑1 (MQ=255)
                                                               tttatatatttttttattttttTATAATAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                         <  1:8675708/122‑1 (MQ=255)
                                                               ttgataatattttttATTTTTTTAACTTAAAAAAA‑AAAAAAAAAAAAAACACATT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  1:950554/119‑1 (MQ=255)
                                                                tGATATTTTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCAC‑‑ATTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  1:1751075/128‑1 (MQ=255)
                                                                 tttatatttttttattttttTAACTTAAAAAAT‑‑AAAAAAAAACAAAACCC‑ATAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                         <  1:1026212/124‑1 (MQ=255)
                                                                 ttaattattttttATTTTTTTTACTTCAAAAAA‑AAAAAAAAAAAAATACCC‑TAAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  2:2950481/121‑1 (MQ=255)
                                                                 tatttatttttttattttttTATATTAAAAAAT‑AAAAAAAAAACAATACCATT‑‑‑AAA‑AAT‑‑‑‑‑‑TAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                   <  1:1244039/124‑1 (MQ=255)
                                                                  tttttttttttttttttttttTATTAAAAAAA‑AAAAAAAAAAAAAATCCAAATAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  2:7462477/123‑1 (MQ=255)
                                                                   ttttttttttttttttttttTATTTAAAAAA‑AAAAAAAAAAAATTATAATTAAAAAT‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTATAATTCCCTATTATACCAAatttt                                                         <  2:3737039/124‑1 (MQ=255)
                                                                      atttttttattt‑ttttTATTTTAAAAA‑AAAAAAAAAAAAATACC‑‑ATTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                   <  2:7366834/128‑1 (MQ=255)
                                                                       tttttttAATTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAAAACC‑CTAAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                    <  2:2533150/128‑1 (MQ=255)
                                                                         tttttATTTTTTTATAATAACAAAA‑AAAAAAAAAAAAAATCCC‑CTTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                  <  1:1143096/128‑1 (MQ=255)
                                                                         tttttAATTTTTTAAATTCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑AAT‑‑‑‑‑AAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                             <  1:8198574/128‑1 (MQ=255)
                                                                           ttttttttttttTATTAAAAAAT‑AAAAAAAAAAAAATTCCATTT‑‑AAA‑AAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                             <  2:8216592/128‑1 (MQ=255)
                                                                           ttttttttttTATATTAACAAAA‑AAAAAAAAAAAAAAAACCTT‑‑‑AAA‑AAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                            <  1:6348966/128‑1 (MQ=255)
                                                                           tttATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATATATTTATAAAAATACCATATTAAAACAAATTATATTTTTaaata                                              >  1:8595616/1‑126 (MQ=255)
                                                                            ttATTTTTTTATAATAAAAAAA‑AAAAAAAAAAAAATAACATT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                             <  1:2428206/128‑1 (MQ=255)
                                                                             tATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAAAAAAATAAATTTATTAAAAATACAAATTATAAAACATTTTATTTTTAAAATaaa                                           >  1:873479/1‑127 (MQ=255)
                                                                             tATTTGTTTATATTAACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                             <  1:2799726/128‑1 (MQ=255)
                                                                              aTTTTTTTAAATTTAAAAAT‑AAAAAAAAAAAAAAACC‑‑ATTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                            <  1:410827/128‑1 (MQ=255)
                                                                                  ttttATATTTAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCTCATTTTATTTTTAAAATAAGATATTg                                     <  1:7343458/127‑1 (MQ=255)
                                                                                   tttatttaataaaaa‑aaaaaaaaaaaaATACCATT‑‑‑AAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                     <  1:3082460/117‑1 (MQ=255)
                                                                                     ttataataaaaaa‑aaaaaaaaaaaaaaaaACATTT‑AAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                      <  1:3826288/119‑1 (MQ=255)
                                                                                     tATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAACAA‑AAAAAACACAAAATATTTATAAAAATACAGATTTATACCACATTTTATTTAAAAAAAAAGAAATAGa                                    >  2:8017648/1‑128 (MQ=255)
                                                                                       taattaaaaaa‑aaaaaaaaaaaaaaaaCCA‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                    <  1:3222417/121‑1 (MQ=255)
                                                                                        aataaaaaaa‑aaaaaaaaaaCAATCAC‑‑ATTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                  <  1:1962441/122‑1 (MQ=255)
                                                                                           cacaAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAACAAAAAAACAAACGCAATTAAATAAAATACCAATTAAAACCCCATTTATTTTTTAAAATAATATATTGaaaaaa                               >  1:827542/1‑123 (MQ=255)
                                                                                            acaAAA‑AAAAAAAAAACAATAACC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACAACATTTTATTTTTAAAATAAGATATTGACataa                               <  1:5470962/128‑1 (MQ=255)
                                                                                            aaaaaa‑aaaaaaaaaaaaATTCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAACAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatat                            <  1:5009179/126‑1 (MQ=255)
                                                                                                aT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAACAA‑‑AAAACAAAACTAAATTTATAAAATTACCCTTTTAAACCCCATTTTATTTTTAAAATAATATATTGACataataatatt                        >  2:7301414/1‑123 (MQ=255)
                                                                                                aT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATATATTTATTAAAATAAAATATTATTCCAAATTTATTTTTTAAAAtaaaataataaaataaatatta                         >  2:8510320/1‑122 (MQ=255)
                                                                                                 t‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAA‑‑TAAAAAAAAACAAAATTAATTAAAATAACCTATTAAAAAACAATTTATTTATAAAAAAAAAAATTGACATAatatataaat                      >  1:6765549/1‑125 (MQ=255)
                                                                                                    aaaaaaaaaaaaTCCCCTT‑‑‑AAA‑AAT‑‑TATAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTa                     <  1:7401346/128‑1 (MQ=255)
                                                                                                            aaaaaatacccttAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAata                  <  1:2989329/117‑1 (MQ=255)
                                                                                                              aaaatccacttAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat               <  1:5158859/119‑1 (MQ=255)
                                                                                                              aaaaaccaattaaaa‑att‑aaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat               <  1:5262963/119‑1 (MQ=255)
                                                                                                                 aatccccttaaa‑aat‑taaaaaAAAAAAAAAAAAAAA‑TAAAAAAAAAAAATTTTTATTAAAATACCATATTATACAAAATTTTATTTTTAAAAAAATATATTGAAATAATATATATAAAATTTATttaa           >  1:2176187/10‑128 (MQ=255)
                                                                                                                 aatccacttaaa‑aat‑taaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata            <  1:711302/119‑1 (MQ=255)
                                                                                                                  taacaataaaa‑att‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatatca           <  1:9264446/122‑3 (MQ=255)
                                                                                                                  atcaccataaa‑aat‑taaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa           <  2:5092560/120‑1 (MQ=255)
                                                                                                                   accaataaaa‑ata‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat          <  1:8780943/123‑1 (MQ=255)
                                                                                                                       ttaaaa‑attaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACt       <  1:1462022/128‑1 (MQ=255)
                                                                                                                          |                                                                                                                                  
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATT  >  CP016816/202369‑202618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.