BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 437880	859 (0.330)	634 (0.200) +ATAT	116/186	20.7	35.9%	intergenic (‑184/+238)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
*	?	CP016816	437881 =	1231 (0.370)	634 (0.200) +ATAT	116/186	20.7	35.9%	intergenic (‑185/+237)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1869 total aligned reads displayed.

TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAA  >  CP016816/437753‑438007

 gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAATCATCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑a                                                                                                                                  >  2:61803/1‑128 (MQ=255)

 gAAACTTATTTATGTAGTTGTAAGTTTCATTTTTAATAAATATAAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAATG‑‑‑‑‑‑a                                                                                                                                  >  2:2104810/1‑128 (MQ=255)

  aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑at                                                                                                                                 >  2:6302520/1‑128 (MQ=255)

    aCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atat                                                                                                                               >  2:4195273/1‑128 (MQ=255)

        aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatat                                                                                                                           >  1:46194/1‑128 (MQ=255)

        aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGATTTAATG‑‑‑‑‑‑atatatat                                                                                                                           >  2:6459804/1‑128 (MQ=255)

         tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatata                                                                                                                          >  2:890178/1‑128 (MQ=255)

          ttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatatat                                                                                                                         <  2:1953749/128‑1 (MQ=255)

            ttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATATTAGGAAATGAAGCAAAGCAAAAAACTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatatatat                                                                                                                       >  2:2459561/1‑128 (MQ=255)

              ttttttGTAATATTAATTTTTTATAAATATAATATATAAAAATTTTATTTTTAAAATAAATATTTTATTAAATGAATCAAATCAAAAACCTCCATATTACCTATAGAGATAATG‑‑‑‑‑‑atatatatatatat                                                                                                                     <  2:1439591/124‑1 (MQ=255)

               caaaaatAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAATG‑‑‑‑‑‑atatatatatatata                                                                                                                    >  2:3103179/7‑128 (MQ=255)

                aGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatatatatatat                                                                                                                   >  1:6946199/1‑128 (MQ=255)

                 gTTGTAAGTTTAATTTTTAATAAATATTATAAATAAAAATTGTATATTTAAAATAAATATTATATTAAATGAAGCAAAGCAAAAACCTCAATATTACCTACAGAGTTAATG‑‑‑‑‑‑atatatatatatatata                                                                                                                  <  2:1022041/128‑1 (MQ=255)

                  ttGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatatatatatatat                                                                                                                 >  2:2192177/1‑128 (MQ=255)

                   tttAATTTTTATTTTTAATAAATATTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTATTATATGATGCAAAGCAAAATCCTCTATATTACCTATAGAGTTAATT‑‑‑‑‑‑atatatatatatttatata                                                                                                                <  1:3079845/126‑1 (MQ=255)

                    gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGATATGTAGCAAAGCAAAAACCTCCATATTAACTATAGAGTTAATG‑‑‑‑‑‑atatatatatatatatatat                                                                                                               <  1:277586/128‑1 (MQ=255)

                     tAAGTTTCATTTTTAATAAATATTAGATATAAAAATTTTATTGTTAAAATAAATATTTTAGTATATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatatatatatatatata                                                                                                              <  1:6838697/128‑1 (MQ=255)

                     tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatatatatatatatata                                                                                                              <  2:1844402/128‑1 (MQ=255)

                     tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatatatatatatatata                                                                                                              >  1:2650402/1‑128 (MQ=255)

                     tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGATAATG‑‑‑‑‑‑atatatatatatatatatata                                                                                                              <  2:3752613/128‑1 (MQ=255)

                        gTTTCATTTTTAATAAATATTAGAAATATAAATTGTATTTTTAAAATAAATATTTTATGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatatatatatatatatatat                                                                                                           <  2:740106/128‑1 (MQ=255)

                        gTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatatatatatatatatatat                                                                                                           >  1:2184353/1‑128 (MQ=255)

                           tCATTTTTAATATATATTATATATATAAATTTTATTTTTAAAATAAATATTTTAGTATATTAATCAAATAAAAAACATCAATATTAACTATAGAGTTATTt‑‑‑‑‑‑atatatatatatatatatatatatata                                                                                                        <  2:4295959/128‑1 (MQ=255)

                             aTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑g                                                                                                     >  2:174662/1‑128 (MQ=255)

                                 ttAATAAATATTAGAAATAAAAATTGTATATATAAAATAAATATTATAGTAAATAAAAAAAAGCAAAAAACTCCAAAAAAAAAATATACTTAAAG‑‑‑‑‑‑ATATAAAAAAATATAAAAATAAATATAT‑TC‑AAg                                                                                                >  1:6412006/1‑128 (MQ=255)

                                  taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatatatatatatatatatatatatattcaa                                                                                                 >  2:666522/1‑122 (MQ=255)

                                   aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCATAAACCTCCATATTACCTATAGAGTTTATG‑‑‑‑‑‑atatatatatatatatatatatatatacaagctct                                                                                                >  2:3239027/1‑120 (MQ=255)

                                   aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatatatatatatatatatatagaaaagcgca                                                                                                >  2:506627/1‑118 (MQ=255)

                                       aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCa                                                                                          >  1:3314986/1‑128 (MQ=255)

                                           ttatataTAAAAATTTTATTTTTAAAATATATATTTTATTATATGAAGCAAATAAAAAAACTCTATATTATATATAGAGTTAAT‑‑‑‑‑‑‑‑TATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATaa                                                                                    <  1:3919777/122‑1 (MQ=255)

                                           ttAGATATAAAAATTGTATTTTTATAATATATATTTTATTTAATTAATCAAAGAAAAAACATCAATATTACATATAGAGATAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCAt                                                                                      <  2:6879881/128‑1 (MQ=255)

                                             aGAAATAAAAATTGTATTTTTAAAATAAATATATTATTAAATGAATCAAAGAAAAAACCTCCATATTAACTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATaaaa                                                                                  <  2:111740/128‑1 (MQ=255)

                                              atattatatattttattttTAAAATAAATATTTTATTAAATCAATCAAATAAAAAAACTAAATATTAACTATAGAGTTTATGAT‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATa                                                                                     <  2:2943183/119‑1 (MQ=255)

                                                  taaataatttATTTTAAAAATAAATATTTTATCTAATTTAGCTAAGCAAAAAACTCCATATTACTTATAGAGATTTTG‑‑‑‑‑‑ATAT‑T‑TATATTTATATATATATATAT‑GC‑AAGAGATCAGCATAAAATtgtg                                                                             <  1:1432896/119‑1 (MQ=255)

                                                  tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATATATCAAAGCGATCAGCATaaaaa                                                                                 >  2:4435370/1‑127 (MQ=255)

                                                  tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑TC‑AAGAGATAAGAATAAAAttg                                                                               >  2:1592232/1‑126 (MQ=255)

                                                  tAAAAAATTTATTTTTAAAAAATATATTTTTTTATATGAATAAAATATAAAAAAAAAATATTAACTATATAGATATTG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GT‑AAGCGATCAGCATAAAATgg                                                                               <  2:452117/128‑1 (MQ=255)

                                                   aaaaaTTGTATTTTTAAAAAAAATATTTTAGGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAAtt                                                                        <  1:1613181/128‑1 (MQ=255)

                                                     aaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑atatatatatatatatatatgtat                                                                                                           >  1:7108803/1‑99 (MQ=255)

                                                     aaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GA‑AAGCGATCAGCATAAAAttgaga                                                                            >  1:3447803/1‑123 (MQ=255)

                                                      aaTTTTATTTTTAAAATATATATTTTATTAAATGAATCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑‑‑‑‑‑‑TATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAAt                                                                         <  2:715403/128‑1 (MQ=255)

                                                      aaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAAt                                                                         <  1:2102184/128‑1 (MQ=255)

                                                         tGTATTTTTAAAATAAATATTTTATGTAATGAAGCAAAGCAAAAAACTCCATATTACCTATAGAGTGAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAAtt                                                                        <  1:6504961/128‑1 (MQ=255)

                                                         tGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑TC‑AAGCGATCAGCATAAAATTGTGAAAtt                                                                        >  1:5859462/1‑128 (MQ=255)

                                                         tGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑CC‑AAGAGATCAGAAAAAAATTATGAAAtt                                                                        >  1:3630964/1‑128 (MQ=255)

                                                          gTATATTTATAATAAATATTTTAGTAAAACAATCAAAGCAAAAACCACCATATTAACTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAAttt                                                                       <  1:2941095/128‑1 (MQ=255)

                                                           tATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GA‑AAGCGATCATCATATAATTGTGAAATTTa                                                                      >  2:1321361/1‑128 (MQ=255)

                                                           tATTTTTAAAAAAAAAATTTTAGGAAAATAACCAAAACAAAAAAACAAATATTATCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTa                                                                      <  1:3789671/128‑1 (MQ=255)

                                                            atatttAAAAAAAATATTTTATTTAATGATTCAAACAAAACAAATCGATATAACATATATAGATATTGAT‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAAttt                                                                       <  2:6774503/125‑1 (MQ=255)

                                                            aTTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAAAATAAAATGGAGAAATTTAg                                                                     >  1:6046891/1‑128 (MQ=255)

                                                            aTTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATAGATATATAT‑TC‑AAGAGATCAGAAGAAAATGGTGAAATTTat                                                                     >  2:2295268/1‑127 (MQ=255)

                                                              ttttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCt                                                                 >  1:2558431/1‑128 (MQ=255)

                                                                 tAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCAATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTg                                                                <  2:5862443/128‑1 (MQ=255)

                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATGAT‑‑‑‑ATATATATATATATATATATATATATAT‑TA‑AAGCTATCAAAATAATATGGTGAAAATTAGAta                                                                  >  1:1007781/1‑127 (MQ=255)

                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑AA‑AATCTATCATCATAAAATATTGAAATATAgtaatg                                                                >  1:891447/1‑123 (MQ=255)

                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAA‑GC‑AAGCGATCAACATAAAATGGTTAAATTTATATCTg                                                                >  1:4957396/1‑128 (MQ=255)

                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                            <  2:5592927/128‑1 (MQ=255)

                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                            >  2:7056957/1‑128 (MQ=255)

                                                                   aaataaatATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                              <  2:573185/128‑1 (MQ=255)

                                                                     ataaataTATTATGAAATGATTAATAGAAAAAACATCCATATTATATATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                            <  1:551638/128‑1 (MQ=255)

                                                                           atTTTATGAAATGAATAAAATAAAAAACCTCGATATTATCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCtt                                                      <  2:656590/128‑1 (MQ=255)

                                                                               ttggtaaTGAAGAAAATAAAAAACCTACATATTACCTATATAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAt                                                  <  1:5244017/123‑1 (MQ=255)

                                                                               tAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑TC‑AATCTATCAGAATAAAATGGTTAAATTTATATCTGAGTTGGTATTAAAt                                                  >  1:2270564/1‑128 (MQ=255)

                                                                                  taaaTGAATCAAATCAAAAAACTCCATATTACATATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTg                                               <  1:1176463/127‑1 (MQ=255)

                                                                                  gAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTa                                             >  2:5227539/1‑128 (MQ=255)

                                                                                  gAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGt                                           <  2:46194/128‑1 (MQ=255)

                                                                                   aaaTGAAGAAAATAAAAAAAATCAATATTACATATATAGTTAATT‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                              <  1:7208826/128‑1 (MQ=255)

                                                                                    aaTGAAGCAAATCAAAAACCTCAATATTCACTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTa                                             <  2:2740124/128‑1 (MQ=255)

                                                                                     attaatcaaatcaaaAACATCCATATTAGCTATAGAGTTAATGAT‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                              <  2:3670315/122‑1 (MQ=255)

                                                                                     aTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATGATATATATATATATATATATATATATATATATAT‑TC‑AAGCTATCAGAATTATAAGTTGAAATATAGATCTGAGTTGGTGATAAAt                                                  >  1:1281206/1‑128 (MQ=255)

                                                                                     aTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATA‑‑‑C‑AAGCGATCAGAATAAAATGGTGAAATATAGATATGATTTTGTCTTAAATTTTTAGtt                                          >  1:4231470/1‑128 (MQ=255)

                                                                                          tcaaataaaaaaCATAAATATTAAATATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttttt                                       <  1:3154665/121‑1 (MQ=255)

                                                                                          gctaagaaaaAACCTCAATATTAGCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttttt                                       <  1:4482464/125‑1 (MQ=255)

                                                                                          gcaaagcaaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATAAGAGTTGGTCTTAAATATGTAGttttt                                       >  1:1991365/1‑128 (MQ=255)

                                                                                            aaagcaaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattt                                   >  1:5113116/1‑128 (MQ=255)

                                                                                               tcaaaAACAACCATATTAACTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattta                                  <  1:6725701/127‑1 (MQ=255)

                                                                                               gcaaaaaaatatatatTACATATAGATTTAATT‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattta                                  <  2:4947519/116‑1 (MQ=255)

                                                                                               gcaaaAACCTCCATAATACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATA‑A‑ATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGATTTTATTtata                                <  1:6633332/128‑1 (MQ=255)

                                                                                               ccaaaAAACTCCATATTAACTATAGAGTTAATT‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattta                                  <  1:5618284/127‑1 (MQ=255)

                                                                                                    aaCCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTATATCTGAGTTGTTCTTAAATTTGTATTTTTTATTTATAGta                             >  2:5481411/1‑127 (MQ=255)

                                                                                                     aCCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GA‑AAGATATCATCAAAAAATATTGAAATTTAGATCTGAGTTTTTCTTAAATTTATAGTTTTTATTTATTGttt                            >  1:175776/1‑128 (MQ=255)

                                                                                                      ccTCCATATTACCTATAGAGTTAATGAT‑‑‑‑ATATATATATATATATATATATATATAT‑GA‑AAGCGCTCACCTAAAAAAATTGATATATAGATCTCTGTTTGTCTTTTATAATTATTTTTtatatatatat                             >  2:3905382/1‑125 (MQ=255)

                                                                                                      ccTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATATGAGTTGGTCTTATATTTGTAGTTTTTATTTATAGTTta                           >  1:5717525/1‑128 (MQ=255)

                                                                                                      ccTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATATAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATTGTTta                           >  1:404114/1‑128 (MQ=255)

                                                                                                       cTCCATATTAACTATAGATTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                          <  1:61803/128‑1 (MQ=255)

                                                                                                        tCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                         <  2:4071293/128‑1 (MQ=255)

                                                                                                         ccATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GA‑ACTCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTAGGTCATAAAGTGCTAGTGTATATTTATAGTATAGaa                        >  2:5340220/1‑128 (MQ=255)

                                                                                                          cATATTACCTATAGAGTTAATGAT‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCTATCAGCATAAAATTTTTAAATTTATATCTGAGTTGTTATTAAATTTTTTGTTTTTTTTTATAGTTtata                         >  2:1244726/1‑128 (MQ=255)

                                                                                                          cATATTACCTAAATAGTTAATG‑‑‑‑‑‑ATATATATATATATAAAAAAATATAAAT‑AC‑AAGCGATCAGCATAAAAGTGAAAAATATAGATCTGAGTTTGAATTAAATTTGTTGTTTTTATTTATAGTTtaaata                       >  2:4820891/1‑124 (MQ=255)

                                                                                                           atatTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATAT‑T‑‑C‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGtt                    >  2:3542989/1‑128 (MQ=255)

                                                                                                               tACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                  <  1:1900265/128‑1 (MQ=255)

                                                                                                               tACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGAATAAAATGGTGAAATTTAGATCTGAGTTGTTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGAtaa                  >  1:4347634/1‑128 (MQ=255)

                                                                                                               tACCTATAGAGATAAAG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                  <  1:6276503/128‑1 (MQ=255)

                                                                                                                 tcTATAGAGTTATTTAT‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                  <  2:6030377/127‑1 (MQ=255)

                                                                                                                 ccTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGAATAATATGGTGAAATTTAGATCTGAGTTTTTCATAAATTTGTATTTTTTATATATAGTTTATAAAGTttata                >  2:2845321/1‑128 (MQ=255)

                                                                                                                     taGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAAttt            >  1:2403554/1‑128 (MQ=255)

                                                                                                                      agagTTAATT‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGAGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa           <  2:3382238/128‑1 (MQ=255)

                                                                                                                         gTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATA‑‑‑A‑AAGCGATCAGAAAAAAATATTGATATATATATATGAGTTTTTGTTAAATATTTAGTTTTTATATATAGTTTATAAATataatattatatatat      >  2:2552902/1‑118 (MQ=255)

                                                                                                                          ttAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAtt       <  1:5386476/128‑1 (MQ=255)

                                                                                                                              tG‑‑‑‑‑‑ATTTATTTATATATATATATAAATATAT‑GC‑AAGCGATCAGAATAAAATTGTGAAATTTAGATCTGAGTTGTTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTa   <  1:4771676/128‑1 (MQ=255)

TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAA  >  CP016816/437753‑438007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.