BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 437880	859 (0.330)	634 (0.200) +ATAT	116/186	20.7	35.9%	intergenic (‑184/+238)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
*	?	CP016816	437881 =	1231 (0.370)	634 (0.200) +ATAT	116/186	20.7	35.9%	intergenic (‑185/+237)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1917 total aligned reads displayed.

GAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437754‑438008

gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑a                                                                                                                                 >  1:2399861/1‑128 (MQ=255)

    cTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAATAAAAGAAAAAAACTCCATATTACATATAGATTTAAT‑‑G‑‑atata                                                                                                                             >  2:6889221/1‑128 (MQ=255)

     ttATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatat                                                                                                                            >  2:5480765/1‑128 (MQ=255)

     ttATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatat                                                                                                                            >  1:2649214/1‑128 (MQ=255)

       aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatat                                                                                                                          >  2:3231882/1‑128 (MQ=255)

       aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatat                                                                                                                          >  1:4023407/1‑128 (MQ=255)

       aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGATTTAAT‑‑G‑‑atatatat                                                                                                                          >  2:6459804/1‑128 (MQ=255)

        tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatata                                                                                                                         >  2:890178/1‑128 (MQ=255)

          tttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatata                                                                                                                       >  2:6660825/1‑128 (MQ=255)

             ttAGTTGTTATTTTAATTTTTTATATATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATTAATCAAAGAAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatat                                                                                                                    <  1:2270352/127‑1 (MQ=255)

             gTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatat                                                                                                                    >  1:6248432/1‑128 (MQ=255)

               aGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCAATAGAGTTAAT‑‑G‑‑atatatatatatatat                                                                                                                  >  1:1167099/1‑128 (MQ=255)

                gTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatata                                                                                                                 <  2:5569362/128‑1 (MQ=255)

                 ttttaattttattttttAAATAATATAATAAATATAAATTTTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAATAAAAAACATCCATATTTTCTATAGAGTTATT‑‑T‑‑atatatatatatatatat                                                                                                                <  1:315186/116‑1 (MQ=255)

                 ttGTTAGTTTAATTTTTAATATATATTATAAATAAAAATTTTTTTTTTAAAATAAATATTTTATTAAATTAATAAAAGCAAAAAACTCAATATTAAATATAGAGTTAAT‑‑G‑‑atatatatatatatatat                                                                                                                <  1:1253116/128‑1 (MQ=255)

                   gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatat                                                                                                              >  2:5849414/1‑128 (MQ=255)

                     aaGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatat                                                                                                            >  2:2267348/1‑128 (MQ=255)

                      aGTTTTATTTTTAATAAATATTAGATATAAAAATTTTATTTTTAAAATAAATATTTTAGGTTATGAAGCTAATCAAAAACCTCCATATTAAATATAGAGATATT‑‑T‑‑ttatatatatatatatatatata                                                                                                           <  1:5583542/128‑1 (MQ=255)

                       gTTTCATTTTTAATAAATATTAGAAATATAAATTGTATTTTTAAAATAAATATTTTATGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatat                                                                                                          <  2:740106/128‑1 (MQ=255)

                       gTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAAACTCCATATTAACTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatat                                                                                                          <  2:3751917/128‑1 (MQ=255)

                       gTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGAAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatat                                                                                                          <  2:155831/128‑1 (MQ=255)

                        ttttttttttAATAAATATTATAAATAAAAATTTTATTTTTAAAATAAATATTTTAGTATATTTATCAAATAAAAAAAATCCATATTAACTATAGAGTTATT‑‑G‑‑atatatatatatatatatatatata                                                                                                         <  1:3305631/123‑1 (MQ=255)

                         ttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatatat                                                                                                        >  2:5014921/1‑128 (MQ=255)

                           cATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatatatat                                                                                                      >  1:3783334/1‑128 (MQ=255)

                             ttttaAATAAATAATAGATAAAAAAATATTATATTTAAAAAAAATATTTTATTAAAATAATCAAAACAAAAAACTCAATATAAACTATAGAGATAAA‑‑G‑‑atatatatatatatatatatatatatatat                                                                                                    <  2:2045290/128‑3 (MQ=255)

                              ttttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATTAAGAAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatatatgcaag                                                                                                   <  2:6563041/128‑6 (MQ=255)

                              ttttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatgcaagcgat                                                                                                   <  1:5487262/128‑10 (MQ=255)

                              ttttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAAACTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCa                                                                                                   <  2:2434378/128‑1 (MQ=255)

                               tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatatatgctagc                                                                                                  >  1:519231/1‑122 (MQ=255)

                               tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGTaa                                                                                                  >  2:42657/1‑128 (MQ=255)

                               tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTACATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatatattatatc                                                                                                  >  2:2545879/1‑122 (MQ=255)

                                 taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑atatatatatatatatatatatatatataaaaga                                                                                                >  1:7189391/1‑122 (MQ=255)

                                 taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATTCAAga                                                                                                >  1:1894315/1‑127 (MQ=255)

                                  aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATATAGTTAAT‑‑G‑‑atatatatatatatatatatatataataaagctat                                                                                               >  2:2830918/1‑118 (MQ=255)

                                   ataaataTTTTATATATAAATTTTTTTTTTAAAATAAATATTTTTGTAAATTAATCCAATAAAAAACATCCATATTATATATAGAGTTAAT‑‑‑‑‑‑‑‑TTTATATATATATATATATATATATGCAAGCGATCac                                                                                          <  1:6374924/128‑2 (MQ=255)

                                         atTAGATATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAATCAAAGAAAAAAACTCAATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCa                                                                                        <  2:1414068/128‑1 (MQ=255)

                                          ttATAAATAAAAATTTTATTTTTAAAAAAAATATTTTATGTAATGAAGAAAAGAAAAAAAATCCATATTAAATATATAGTTAAT‑‑G‑‑‑T‑TATATATATATATATATATATATATGCAAGCGATCAGCATaa                                                                                     <  1:647816/128‑1 (MQ=255)

                                          ttAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATGAATAAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATaa                                                                                     <  2:4431335/128‑1 (MQ=255)

                                           tataaaTAAAAATTTTATTTTTAAAATAAATATTTTATGAAATTAATAAAAGCAAAAACATCCATATTAAATATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATa                                                                                      <  1:7045338/125‑1 (MQ=255)

                                            aGATATAAAAATAGTATTTTTAATATAAATATTTTAGTATATTAATAAAATCAAAAAACTCTATATAACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAACATaa                                                                                     <  2:2152847/128‑1 (MQ=255)

                                            aGAAATAAAAATTTTATTTTTAAAATAAATATTTTAGGAAATGTAGCTAAGAAAAAAGCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATaa                                                                                     <  2:1910115/128‑1 (MQ=255)

                                            aGAAATAAAAATTGTATTTTTATAATATATATTTTAGTAAATGAATCAAAGAAAAAACCTCCATATTAACTATATAGTTAAT‑‑T‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATaa                                                                                     <  1:4910387/128‑1 (MQ=255)

                                            aGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATGAAAGCTATCAGCaaaaaa                                                                                   >  1:1582065/1‑128 (MQ=255)

                                             gAAATAAAAATATTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATaaa                                                                                    <  1:979067/128‑1 (MQ=255)

                                               aaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATGTATATATATATGCAAGCGATCAGCATAAAATgg                                                                                <  2:1200309/128‑1 (MQ=255)

                                               aaTAAAAATTGATTTTTTAAAATAAATATTTTAGTAAATGAATCAAATAAAAAAAATCTATATTAACTATAGAGATATTTAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATaaa                                                                                    <  2:1702521/128‑1 (MQ=255)

                                                  aaaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATaaa                                                                                    >  2:6163859/1‑119 (MQ=255)

                                                    aaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATAAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAtt                                                                         <  2:2913096/128‑1 (MQ=255)

                                                    aaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTTCCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATGCAAGCGTTCAGCATAAAATTGTGaaa                                                                           >  2:4934347/1‑128 (MQ=255)

                                                    aaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGAATAAAATTGTGa                                                                             >  1:5816163/1‑128 (MQ=255)

                                                     aaTTTTATTTTTAAAATATATATTTTATTAAATGAATCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑‑‑‑‑TATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAt                                                                          <  2:715403/128‑1 (MQ=255)

                                                     aaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAt                                                                          <  1:2102184/128‑1 (MQ=255)

                                                       tagTATTTTTAAAATAAATATTTTATTAAATTAATAAAAGAAAAAACCTAAATATTAAATATAGAGTTAAT‑‑G‑‑ATATATAAATATATATATATATATATATGCAAGCTATCAGCATAAAATGGTGAAAt                                                                          <  1:6620804/126‑1 (MQ=255)

                                                        tGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATGAAATCGATCAGAATAAAATGGTGaattata                                                                       >  2:1802914/1‑123 (MQ=255)

                                                         gTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACATCCATATTACCTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATATACAAGCGATAAGAAAAAAATTTTGaatt                                                                          >  1:1747388/1‑126 (MQ=255)

                                                          tATTTTTAAAAAAAATATTTTAGTAAAAGACGCAAATCAAAAACCTCCATATTACATATAGAGTTAAT‑‑T‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTa                                                                       <  1:5021005/128‑1 (MQ=255)

                                                           atatttAAAAAAAATATTTTATTTAATGATTCAAACAAAACAAATCGATATAACATATATAGATATT‑‑GATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAttt                                                                        <  2:6774503/125‑1 (MQ=255)

                                                              tttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGAGATCAGAATAAAATAGATAAATTTAGAta                                                                   >  1:838334/1‑127 (MQ=255)

                                                              tttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATCCACGCGATAAGCATAAAATGGTGAAATTTAGATc                                                                   >  1:5340829/1‑128 (MQ=255)

                                                                tAAAATAAATATTTTAGTAAATTAAGCAAAGAAAAAACCTCTATATTATATATAGAGTTAAT‑‑‑‑‑‑TATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  1:6703064/128‑1 (MQ=255)

                                                                tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATATTAAAGCTATCAAAATAATATGGTGAAAATTAGAta                                                                   >  1:1007781/1‑127 (MQ=255)

                                                                tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                             >  2:7056957/1‑128 (MQ=255)

                                                                         tatTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCTATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCt                                                        >  1:2747099/1‑128 (MQ=255)

                                                                           ttttAGTAAATGAATCAAATCAAAAACCTCAATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                    <  1:4474752/128‑1 (MQ=255)

                                                                            tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAGT‑‑GATATATATATATATATATATATATATATATGAAAGCGATCATCATAAAATGGTGATATTTAGATATGAGTTTGTCtt                                                       >  1:6936015/1‑128 (MQ=255)

                                                                              tAGTAAATGAATCAAATCAAAAAACTCAATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAt                                                   <  2:5183214/128‑1 (MQ=255)

                                                                               agttaaTTAAGAAAAGAAAAAAACTCCATATTACCTATAGAGATAAT‑‑T‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAtt                                                  <  1:2180247/124‑1 (MQ=255)

                                                                                ggAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGAATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTTAATTTGt                                               >  1:2923127/1‑128 (MQ=255)

                                                                                 gAAATTAATCAAAGAAAAAACCTCAATATTACATATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTg                                                <  2:6296030/128‑1 (MQ=255)

                                                                                 gAAATGAAGAAAATCAAACACCTCTATATTAACTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGCCTTAAATTTg                                                <  2:4172297/128‑1 (MQ=255)

                                                                                    aTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGtt                                           >  2:5316623/1‑128 (MQ=255)

                                                                                     tgtatcaaagcaaaAACCTCTATATTAACTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATATAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGt                                            <  2:4056878/123‑1 (MQ=255)

                                                                                       aagcaaagcaAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttt                                          <  2:3873184/128‑1 (MQ=255)

                                                                                        agcaaagcaaAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGCTCAGCATAAAATGGTGAAATTTAGATCTGAGTTGTTCTTAAATATTTAGtttt                                         >  2:2728245/1‑128 (MQ=255)

                                                                                         gcaaagcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATAAGAGTTGGTCTTAAATATGTAGttttt                                        >  1:1991365/1‑128 (MQ=255)

                                                                                                aaaaaaCTCCATATTACCTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattta                                   <  1:3424648/128‑1 (MQ=255)

                                                                                                 aaatCCTCAATATAAACTATATATATAAT‑‑T‑‑ATATAAATATAAATATATATATATATATGCAAGAGATAAGCATAAAATGTTGACATTTAGATCTGAGTTTGTCTTAAATTTGTAGTTTTTATTTATAg                                <  1:6815368/128‑1 (MQ=255)

                                                                                                 aaaaCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATAATCAAGCGATCAACAAAAAATTGTGAAATTTAGATCTGTGTGTTTCTTATATTTTTTTTTTTTATTTATAg                                >  1:3594951/1‑128 (MQ=255)

                                                                                                    aactagatatTAACTATAGAGTTATT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATaa                         <  2:3526768/122‑1 (MQ=255)

                                                                                                      cTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGAAAGCGATCAGCAAATAATTTTGAAATATATATCTGAGTTTGTATAAAATTTGTAGTTTTTATTtttattttat                           >  2:5714914/1‑128 (MQ=255)

                                                                                                      cTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGtt                     >  2:6021523/1‑128 (MQ=255)

                                                                                                       tccatatttaaaataGAGTTAAT‑‑T‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                          <  1:4192028/116‑1 (MQ=255)

                                                                                                        ccATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGAAAGAGATCAGAATAAAATGTTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATaa                         >  1:4334566/1‑128 (MQ=255)

                                                                                                         cATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta                    <  1:254613/128‑1 (MQ=255)

                                                                                                         cATATTAACTATAGAGATAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta                    <  2:4615768/128‑1 (MQ=255)

                                                                                                            atTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATTGTGATATTTATATCTGATTGTGTCTTAAATTTGTAGTTTTTATATATAGTTTATAAAttt                     >  1:3050610/1‑128 (MQ=255)

                                                                                                            atTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaata                 >  2:3377906/1‑128 (MQ=255)

                                                                                                             ttACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTTTAGTTTTTATTTATATTTTATAAATTta                    >  1:6141668/1‑128 (MQ=255)

                                                                                                             ttACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaat                  >  2:1091918/1‑128 (MQ=255)

                                                                                                             ttACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATCCAAGAGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATATAGtaata                  >  1:4747320/1‑124 (MQ=255)

                                                                                                              tACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAATGttta                   >  2:1303834/1‑126 (MQ=255)

                                                                                                                aatatataGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaata                 <  2:3092328/126‑1 (MQ=255)

                                                                                                                        gagttatagatatatatatatatatatatatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAAttt             <  2:4792707/117‑1 (MQ=255)

                                                                                                                         ttaatgatatatatatatatatatatatatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGATTTGTTATTAAATTTGTAGTTTTTATTTATAGTTTATATAGTTAATATTTTa            >  1:5661805/11‑128 (MQ=38)

                                                                                                                           aaT‑‑G‑‑ATATATATATATATATATATATATATATGATAGCGATCAGAATAAAATTGTGATATTTAGATCTGAGTTTGTCTTTAATTTATAGTTTTTATTTATATTTTATAAATTTAATATTTTAGAtttt      >  2:4512087/1‑128 (MQ=255)

                                                                                                                                g‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTaa   <  1:5997882/128‑1 (MQ=255)

                                                                                                                                 atatatatatatatatatatatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTAAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTa    <  1:3882019/126‑1 (MQ=255)

                                                                                                                                 atatatatatatatatatatatatatatatGCAAGCGATCAGCATAAAATGGTGAAATATAGATCTGTGTTGGTCTTAAATTTTTATTTTTTATTTATAGTTTATAATGTTAATAATTTAGATTtata    >  1:4585387/3‑128 (MQ=255)

                                                                                                                                   atatatatatatatatatatatatatatGCAAGCGATCAGCATAAAATGTTGAAATTTATATCTGATTATATCTTAAATTTCTAGTTTTTATTTATAGTTTATAAAGTAAATAATTTATATTTTTAat  >  2:365280/1‑128 (MQ=255)

                                                                                                                                   atatatatatatatatatatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAat  >  1:141946/1‑128 (MQ=255)

GAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437754‑438008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.