BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	437885 =	1568 (0.610)	169 (0.080)	90/204	18.0	12.2%	intergenic (‑189/+233)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
*	?	CP016816	= 437880	1174 (0.570)	169 (0.080)	90/204	18.0	12.2%	intergenic (‑184/+238)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1741 total aligned reads displayed.

CTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTT  >  CP016816/437758‑438012

   aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatat                                                                                                                                             >  2:4110351/1‑128 (MQ=255)

    tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata                                                                                                                                            >  1:2069847/1‑128 (MQ=255)

     ttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑t                                                                                                                                         >  1:2701899/1‑128 (MQ=255)

      tttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta                                                                                                                                        <  2:4209380/128‑1 (MQ=255)

       ttGTAGTTGTTAGTTTCATTTTTAATAAATACTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑t                                                                                                                                     <  2:3276967/128‑1 (MQ=255)

          tAGTTTAAAGTTTCAATTTTAATAAATATTAGATATAAAAATTGTAAATTTAAAATAAATATTTTATTAAATTAATCAAATCAAAAACCTCCAAATTAACTATAGAGATAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tata                                                                                                                                  <  1:959552/128‑1 (MQ=255)

           agtttatatagtCATTTTTAAAAAATATTATAAATAAAAATATTATATTTAAAATAAATATTTTATTAAAAGAATATAATCAAAAAACACCATATAACCAATAGAGATAAA‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatat                                                                                                                                 <  1:2296950/117‑1 (MQ=255)

            gTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatata                                                                                                                                <  1:4229221/128‑1 (MQ=255)

             ttGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatat                                                                                                                               >  2:3124618/1‑128 (MQ=255)

               tttaGTTTATTTTTTAATAAATATTATATATAATAATTGTATTTTTAAAATAAATATTTTTGTAAATTAAGCAAATCAAAAACATCCATATTAACTATAGAGTTATT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatat                                                                                                                             <  2:2838339/125‑1 (MQ=255)

               gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatat                                                                                                                             <  1:4498014/128‑1 (MQ=255)

                tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatata                                                                                                                            >  1:3258337/1‑128 (MQ=255)

                tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatata                                                                                                                            >  1:4885195/1‑128 (MQ=255)

                  atttttATTTTTAATAAATATTATAAATAAAAATTGTATTTTTATAATAAATATTTTATTATATGAAGCAAAGAAAAAAACTCCATATTAACTATAGAGTTAAA‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatatata                                                                                                                          <  1:1655621/126‑1 (MQ=255)

                  attttAATTTTTAATAAAAATTAGATATAAAAATTGTATTTTTTAAATTAAAATTTTATTAAATCATTAAAATAAAAAAACTCCAAATTACCAATAGAGATTTT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatatata                                                                                                                          <  2:1749027/126‑1 (MQ=255)

                   gtttattttttAATAAATATTAGAAATAAAAATTTTATTTTTAAAATAAATTTTTTATTAAATGAATAAAAACAAAAAACTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatatatat                                                                                                                         <  1:3465398/122‑1 (MQ=255)

                    tttAATTTTTAATAAATATTATAAATATAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAATCAAATAAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatatatata                                                                                                                        <  2:2063443/128‑1 (MQ=255)

                     ttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatatatatat                                                                                                                       >  1:4977379/1‑128 (MQ=255)

                      tCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATTAATCAAAGAAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatatatatata                                                                                                                      <  1:1173743/128‑1 (MQ=255)

                      tCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAACACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatatatatata                                                                                                                      >  2:4692871/1‑128 (MQ=255)

                      tCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tttatttatatatata                                                                                                                      >  1:3356331/1‑128 (MQ=255)

                        tattttAAAAAATATTATATATAAAAATATTATTTTTAAAATAAATATTTTATTAAATCAATCAAATAAAAAACCACCATATTACATATAGAGTTata‑‑‑‑‑‑t‑‑‑‑atatatata‑‑ta‑‑tatatatatatatatata                                                                                                                    <  2:1267965/126‑2 (MQ=255)

                        aTTTTTAATAAATATTATAAATAAAAATTTTTTTTTTAAAATAAATATTTTATTAAATTAATAAAATAAAAAACATCAATATTAACTATATAGTTAAT‑‑‑‑‑‑T‑‑‑‑atatatata‑‑ta‑‑tatatatatatatatata                                                                                                                    <  2:4501487/128‑2 (MQ=255)

                        aTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatatatatatata                                                                                                                    >  1:352388/1‑127 (MQ=255)

                         tttttAATAAATATTAGAAATAAAAAATTTATTTTTAAAATATATATTTTATGAAAAGAACCAAAGCTAAAACCTCAATATAACCTATATAGTTAAA‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatatatatatgcaa                                                                                                                   <  1:4108692/128‑5 (MQ=255)

                              aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatatatatatatatattaa                                                                                                              >  1:5495224/1‑121 (MQ=255)

                              aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCg                                                                                                    >  2:2690070/1‑128 (MQ=255)

                               gatattattatAAATAAAAATATTATTTTTAAAATAAATATTTTATTATATTAATCAAATCAAAAAACACCATATAAACTATAGAGATAAT‑‑‑‑‑‑T‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGa                                                                                                   <  2:1902467/123‑1 (MQ=255)

                                taaataTTAGAAATAAAAATTGTATATATAAAATAAATATTTTATGAAATGAATCAAAGAAAAAACCTCAATATTAACTATAGAGTTAAA‑‑‑‑‑‑T‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGAt                                                                                                  <  1:5075288/128‑1 (MQ=255)

                                 aaataTTAGAAATATAAATTTTATTTTTATATTAAATATTTTATGAAATTATTAAAATAAAAAAACTATATATTAAATATAGAGTTATT‑‑‑‑‑‑T‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATc                                                                                                 <  2:3990110/128‑1 (MQ=255)

                                  aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATTT‑‑‑‑‑‑‑‑GAA‑‑ATCGATCa                                                                                                >  2:238036/1‑128 (MQ=255)

                                   atatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATTAATCAAATCAAAAACCTCCATATTCCCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑‑‑‑‑ATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATa                                                                                           <  1:1889928/128‑1 (MQ=255)

                                   atatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAATACATCCATATTAAATATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑atatatata‑‑ta‑‑tatatatatatatatattagctatatatc                                                                                                         >  1:588726/1‑116 (MQ=255)

                                     atTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑‑‑ATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATa                                                                                           <  1:3722994/128‑1 (MQ=255)

                                      ttAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GAA‑‑ATAGAtcatcaa                                                                                            >  1:245640/1‑127 (MQ=255)

                                        aGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGAAAAGCAAAAACCTCCATATTAACTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATaa                                                                                          <  2:3012577/128‑1 (MQ=255)

                                        aGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑ATCGATCAGCATaa                                                                                          >  1:1118588/1‑128 (MQ=255)

                                         gAAATAAAAATTTTATTTTTAAAATATATATTTTAGGAAATTAACAAAATAAAAAAACTCAATATTACATATAGAGTTAAT‑‑‑‑‑‑GAT‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATa                                                                                           <  1:1271152/128‑1 (MQ=255)

                                         gAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑GAT‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GAA‑‑AGCTATCAGCaaa                                                                                           >  2:4290682/1‑126 (MQ=255)

                                         gAAATAAAAATTGTATATTTAAAATAAATATTTTATGAAATGAAGCAAAGCAAAAACCTCCATATTAACTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATaaa                                                                                         <  1:3627240/128‑1 (MQ=255)

                                            aTAAAATTTGTATTTTTAATATAAATATTTTATTATATGAACAAATTAAAAAATATCAATATATCTTATTGAGTTTAT‑‑‑‑‑‑GTT‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATaaaa                                                                                        <  2:4880756/128‑1 (MQ=255)

                                            aTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAAAGAATAAAATAAAAAAAATACATATTAACTATAGAGATAATTA‑‑‑‑T‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATaaaa                                                                                        <  2:3440724/128‑1 (MQ=255)

                                             tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATTAATCAAAGCAAAAACCTCCATATTATCTATAGAGTTAAT‑‑‑‑‑‑GATATATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATaaa                                                                                         <  1:4338488/128‑1 (MQ=255)

                                              aaaaaTTGTATTTTTAATATAAATATTTTATGAAATGAAGCAAAGCAAAAAACTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑‑‑‑‑ATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGaaa                                                                                <  2:5303243/128‑1 (MQ=255)

                                              aaaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑GAT‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGCTCAGCATAAAAtt                                                                                      >  1:3045524/1‑127 (MQ=255)

                                               aaaaTTTTTTTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGAAAAAACCTCCATATTAACTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTg                                                                                   <  2:1070747/128‑1 (MQ=255)

                                                 aaTTGTATTTTTAAAATATATATTTTAGGAAATGAAGCAAAGCAAAAACCTCAATATTACCTATAGAGTTAAT‑‑‑‑‑‑GAT‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTg                                                                                   <  1:1470662/128‑1 (MQ=255)

                                                  atagtttttttAAAATATATATTTTAGGAAATGAATCAAAGCATAAAACTGTATATTAGCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATAATTA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGaaa                                                                                <  2:1149543/122‑1 (MQ=255)

                                                  aTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑‑‑‑‑ATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑ATCGATCAGCATAAAATGGTGAAATTTa                                                                            >  1:456286/1‑128 (MQ=255)

                                                      tttttttAAAATAAATATTTTATTAAATGAATAAAATAAAAAAACTATATATTAAATATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTa                                                                            <  1:2188777/126‑1 (MQ=255)

                                                      tATTTTTAAAATAAATATTTTATTAAATGACGCAAAGCAAAAAACTCAATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTa                                                                            <  2:5104695/128‑1 (MQ=255)

                                                      tATTTAAAAAAAAAATATATTAGCAAAAGAAGCAAAGCAAAAACCACCATAATCCCTATAGAGATAAT‑‑‑‑‑‑G‑‑‑‑‑‑‑‑ATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATc                                                                        <  2:5418101/128‑1 (MQ=255)

                                                       aTTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGAGAAATTTAg                                                                           >  2:1362245/1‑128 (MQ=255)

                                                        tttttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑GAT‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTa                                                                            <  1:3182474/128‑1 (MQ=255)

                                                          tttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑ATCTATCAGCATATAATGGAGAAATATAGATc                                                                        >  2:2289541/1‑128 (MQ=255)

                                                             aaaaTATATATTTTAGTAAATGAATAAAAGCAAAAACCTCAATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGa                                                                     <  1:4660399/128‑1 (MQ=255)

                                                             aaaaTAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑‑‑‑‑GAT‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GAT‑‑ATCGATCATAATAAAATGGTGAAATTTATATCt                                                                       >  1:439872/1‑128 (MQ=255)

                                                              aaataaatATTTTATCAAAATAAGAAAAGAAAAAACCACAATATTAAATATAGAGATAATTATATAT‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGa                                                                          <  2:1421086/128‑1 (MQ=255)

                                                               aaaaaataTTTTATTAAAAGAATCAAATAAAAAAACTCTATATTATATATAGAGTTAAT‑‑‑‑‑‑T‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGt                                                                   <  1:5304703/125‑1 (MQ=255)

                                                                    atatTTTAGGAAATGAAGCAAAGCAAAAACCTCCATAATACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑‑‑ATATATA‑‑TA‑‑TATATATATATATGTAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCtt                                                            <  2:88292/128‑1 (MQ=255)

                                                                     tatTTTAGTAAATGAAGCAAATAAAAAACATCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑‑‑‑‑ATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                         <  1:196129/128‑1 (MQ=255)

                                                                       ttttAGGAAATGAAGCAAATCAAAAACATCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTa                                                           <  1:1806477/128‑1 (MQ=255)

                                                                       ttttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑‑‑‑‑‑‑ATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTg                                                     <  1:17293/128‑1 (MQ=255)

                                                                        tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCT‑‑AGCGATCATAATAAAATGGTGAAATTTAGATCTGAGGTGGTCGTaa                                                          >  1:3886250/1‑128 (MQ=255)

                                                                         ttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                         >  1:5410786/1‑128 (MQ=255)

                                                                          tAGGAAATGAAGCAAAGCAAAAACCGCCAGATTCCCGATAGAGTTAAT‑‑‑‑‑‑C‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑CGCGATCATCAATAAATCGTGATATATAGATCTGTGTTGGTCTTaaag                                                        >  1:2810424/1‑127 (MQ=255)

                                                                           attaaaTGAATAAAATCAAAAAAAACCATATAACATATAGAGTTAAT‑‑‑‑‑‑GAT‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                         <  2:3626700/125‑1 (MQ=255)

                                                                            ggAAATCAAGAAAAGAAAAAACCTACATATTATCTATATAGTTAAT‑‑‑‑‑‑G‑‑‑‑‑‑ATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                                    <  2:2938107/128‑1 (MQ=255)

                                                                              taaTGAATCAAATCAAAAACATCAATATTACAAATATAGTTATA‑‑‑‑‑‑T‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                                    <  2:4788386/127‑1 (MQ=255)

                                                                               aaTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGAATAAAATGGAGAAATTTAGATCTGAGATGCTCTAAAATTAGTa                                                   >  2:1636896/1‑128 (MQ=255)

                                                                                 tGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑‑‑ATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTCTCTTAAATTTGTA‑Gttt                                              >  1:814216/1‑128 (MQ=255)

                                                                                 tGAAACACAGCAAAAACCTCCATATTTCATATAGAGATAAA‑‑‑‑‑‑GAT‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTa                                                   <  1:1373410/128‑1 (MQ=255)

                                                                                  gAAGCAAAGCAAAAACCTCCATATTACCGATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑TCT‑‑AGCTCTCAGCATAAAATTGTGATATTTAGATCTGAGTGGTTCTTATATTTGTA‑Gtt                                               >  1:2920389/1‑128 (MQ=255)

                                                                                    agcaaagaaaTAACATCCATATAAACTATATAGTTTAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑Gtttt                                             <  1:5198034/128‑1 (MQ=255)

                                                                                             cttccgatcttatTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAg                                    <  1:1013660/118‑1 (MQ=255)

                                                                                             aaaaCCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑‑‑ATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCTATCATAATAAAATTGTGAAATTTAGATCTGAGTTTGTATTAAATTTGTA‑GTTTTTATTTATAGtt                                  >  2:3764401/1‑128 (MQ=255)

                                                                                                aCCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGAGATAAGCATAAAATGGTGAATTATATATATGATTTGCTATTAAATTTGTA‑GTTTTTATTtatattat                                 >  2:745532/1‑124 (MQ=255)

                                                                                                aCCTCCATATTAACTATAGAGATATT‑‑‑‑‑‑GATATATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTtata                                     <  2:4577684/128‑1 (MQ=255)

                                                                                                  cTCCATATTATCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATC‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTtat                               <  1:1576773/128‑1 (MQ=255)

                                                                                                   tCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATATATATATAAGAA‑‑AGCTATCAGAATAAAATTGTAATATATAGATCTGAGTTTGTCTTATATTTTTA‑GTTTttatttat                                      >  2:2485068/1‑128 (MQ=255)

                                                                                                   tCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATAT‑T‑‑‑‑‑‑‑‑‑CA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTTTA‑GTTTTTATTTATAGTTTATaat                            >  2:5227003/1‑127 (MQ=255)

                                                                                                     cATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTGGTCTTAATTTTGTT‑GTTTTTATTTATAGTTtatata                            >  1:2378927/1‑126 (MQ=255)

                                                                                                     aatatTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑‑‑‑‑ATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTta                        <  2:2746342/127‑1 (MQ=255)

                                                                                                      atatTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑TCA‑‑AGCGATCAGCATAAAATTGTGATATTTAGATCTGAGTTTCTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAg                           >  1:3840154/1‑128 (MQ=255)

                                                                                                      atatTAACTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATATTTATTTATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTtat                               <  2:4977379/128‑1 (MQ=255)

                                                                                                           aCCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑ATAATAGAGATCAAAATAAAATTGTCATATATATATATGAGATGGT‑GAATATTTATATGTATTTATTTATATATTATAAAtttt                        >  2:669808/1‑127 (MQ=255)

                                                                                                            ccTATAGAGTTACT‑‑‑‑‑‑GAT‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTtaa                       <  2:2140457/128‑1 (MQ=255)

                                                                                                                           atataattatatatatata‑‑ta‑‑tatatatatatatatat‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTTAATAATTTa                <  1:691096/118‑1 (MQ=255)

                                                                                                                           agataattatatatatata‑‑ta‑‑tatatatatatatatat‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTTAATAATTTa                <  2:3356331/118‑1 (MQ=255)

                                                                                                                              gagttatagatatata‑‑ta‑‑tatatatatatatatat‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAt             <  2:1965439/119‑1 (MQ=255)

                                                                                                                                  cgcttgcatata‑‑ta‑‑tatatatatatatatat‑‑‑‑‑‑‑‑GCA‑‑CGCGATCAGCATAAAATGGTGAAATTTAGATCTGATTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAttttt         >  2:3842909/8‑128 (MQ=39)

                                                                                                                                   attgatatata‑‑aa‑‑tatatatatatatatat‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTa        <  2:5513627/124‑1 (MQ=255)

                                                                                                                                    tatatttata‑‑tt‑‑tatatatatatatatat‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTaa       <  2:3504069/127‑1 (MQ=255)

                                                                                                                                     atatatata‑‑ta‑‑tatatatatatatatat‑‑‑‑‑‑‑‑GCA‑‑AGCGATCACCATAAAATTTTGAAATTTATATCTGTGTTGGTCTTATATTTTTA‑TTTTTTTTTTATTGTTTATATAGATAATAATTTAGATTTTTTat      >  2:4379154/1‑128 (MQ=255)

                                                                                                                                       atatata‑‑ta‑‑tatatatatatatatat‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTta                                <  1:4786891/100‑1 (MQ=255)

                                                                                                                                        tatata‑‑ta‑‑tatatatatatatatat‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATAtt   >  1:2606350/1‑128 (MQ=255)

                                                                                                                                        tatata‑‑ta‑‑tatatatatatatatat‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATAtt   >  2:2566828/1‑128 (MQ=255)

                                                                                                                                        tatata‑‑ta‑‑tatatatatatatatat‑‑‑‑‑‑‑‑GAA‑‑AGCGATCAGAAAAAAATGGTGAAATATAGATGTGAGTTGGTATTATATTTGTA‑TTTTTTATTTATAGTTTATAAAGTTAATTATTTATATTTTTAATAtt   >  2:1543641/1‑128 (MQ=255)

                                                                                                                                         atata‑‑ta‑‑tatatatatatatatat‑‑‑‑‑‑‑‑GCA‑‑AGCTATCAGAATAAAATTTTGAAATTTAGATCTGATTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTTAATAATTTATATTTATAATAttt  >  1:3968168/1‑128 (MQ=255)

                                                                                                                                         atata‑‑ta‑‑tatatatatatatatat‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATAttt  >  1:2508106/1‑128 (MQ=255)

CTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑G‑‑‑‑ATATATATA‑‑TA‑‑TATATATATATATATAT‑‑‑‑‑‑‑‑GCA‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTA‑GTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTT  >  CP016816/437758‑438012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.