breseq  version 0.32.0  revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
JC 1,110 +66 bp intergenic (+1035/+2045) TMARI_RS09660 → / ← TMARI_RS00005 hypothetical protein/IGHMBP2 family helicase
RA 30,321 G→A Q327* (CAG→TAG)  TMARI_RS00135 ← peptide ABC transporter substrate‑binding protein
RA 66,952 C→T H91Y (CAC→TAC)  TMARI_RS00310 → ketohydroxyglutarate aldolase
RA 531,887 Δ1 bp intergenic (‑320/‑355) TMARI_RS02580 ← / → TMARI_RS02585 ABC transporter permease/molecular chaperone GroES
RA 621,104 C→T D331N (GAT→AAT)  TMARI_RS03010 ← manganese‑dependent inorganic pyrophosphatase
RA 1,073,831 A→G L152P (CTC→CCC)  TMARI_RS05405 ← MFS transporter
RA 1,104,046 C→T A78V (GCG→GTG)  TMARI_RS05545 → TrkA family potassium uptake protein
MC JC 1,814,273 (CCCT)2→1 intergenic (‑48/+60) TMARI_RS09830 ← / ← TMARI_RS09405 DUF4896 domain‑containing protein/maltose/maltodextrin ABC transporter substrate‑binding protein MalE
JC 1,815,540 Δ28 bp intergenic (‑23/‑201) TMARI_RS09405 ← / → TMARI_RS09410 maltose/maltodextrin ABC transporter substrate‑binding protein MalE/alpha‑amylase

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_021214 1815338 =372 (1.080)2654 (7.670) 290/450 0.0 58.2% coding (180/1182 nt) TMARI_RS09405 maltose/maltodextrin ABC transporter substrate‑binding protein MalE
?NC_021214 1822087 = 3433 (9.920)coding (1470/2025 nt) TMARI_RS09430 glycoside hydrolase family 13
* ? NC_021214 = 18238173747 (10.830)2600 (7.520) 312/450 -0.0 55.9% coding (1158/2532 nt) TMARI_RS09435 pullulanase
?NC_021214 = 1833082 358 (1.030)coding (661/882 nt) TMARI_RS09470 sugar ABC transporter permease