mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 81 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_021214 | 358,511 | 0 | G | A | 35.8% | 249.7 / 71.7 | 165 | intergenic (‑93/‑92) | TMARI_RS01730/TMARI_RS01735 | hypothetical protein/DUF2089 domain‑containing protein |
| * | NC_021214 | 1,239,628 | 0 | T | G | 32.2% | 363.6 / 53.4 | 216 | C97G (TGT→GGT) | TMARI_RS06210 | oxidoreductase |
| * | NC_021214 | 825,745 | 0 | C | T | 30.7% | 318.9 / 71.9 | 193 | P81S (CCC→TCC) | TMARI_RS04110 | histidinol‑phosphatase |
| * | NC_021214 | 192,914 | 0 | T | G | 30.0% | 315.0 / 17.5 | 191 | noncoding (2147/3022 nt) | TMARI_RS00890 | 23S ribosomal RNA |
| * | NC_021214 | 769,661 | 0 | A | G | 29.9% | 207.0 / 106.1 | 167 | S296P (TCG→CCG) | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 232,200 | 0 | G | A | 29.5% | 413.0 / 82.7 | 218 | R259Q (CGA→CAA) | TMARI_RS01120 | glycine‑‑tRNA ligase subunit beta |
| * | NC_021214 | 358,524 | 0 | T | A | 29.4% | 374.5 / 48.4 | 172 | intergenic (‑106/‑79) | TMARI_RS01730/TMARI_RS01735 | hypothetical protein/DUF2089 domain‑containing protein |
| * | NC_021214 | 724,170 | 0 | A | T | 27.6% | 476.7 / 78.8 | 214 | I257K (ATA→AAA) | TMARI_RS03585 | chemotaxis protein CheA |
| * | NC_021214 | 769,657 | 0 | G | T | 27.1% | 254.2 / 74.5 | 171 | A297D (GCC→GAC) ‡ | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 769,655 | 0 | A | T | 27.0% | 281.2 / 92.1 | 176 | S298T (TCG→ACG) | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 480,443 | 0 | T | G | 26.9% | 442.3 / 54.3 | 247 | G682G (GGT→GGG) | TMARI_RS02340 | DNA‑directed RNA polymerase subunit beta |
| * | NC_021214 | 769,656 | 0 | G | C | 26.6% | 317.0 / 104.7 | 171 | A297A (GCC→GCG) ‡ | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 769,658 | 0 | C | T | 26.6% | 241.2 / 75.4 | 170 | A297T (GCC→ACC) ‡ | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 1,001,051 | 0 | A | C | 26.6% | 227.0 / 25.0 | 109 | I388I (ATA→ATC) | TMARI_RS05040 | DUF1156 domain‑containing protein |
| * | NC_021214 | 1,777,055 | 0 | A | T | 26.6% | 360.4 / 47.8 | 160 | N62K (AAT→AAA) | TMARI_RS09225 | type I‑B CRISPR‑associated protein Cas5 |
| * | NC_021214 | 769,664 | 0 | C | T | 26.5% | 254.4 / 71.5 | 167 | G295R (GGA→AGA) | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 1,869,424 | 0 | C | G | 26.1% | 150.0 / 23.6 | 172 | intergenic (+36/‑75) | TMARI_RS09635/TMARI_RS09660 | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase/hypothetical protein |
| * | NC_021214 | 769,663 | 0 | C | T | 25.8% | 246.3 / 62.3 | 167 | G295E (GGA→GAA) | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 825,753 | 0 | T | G | 25.1% | 377.8 / 23.8 | 180 | G83G (GGT→GGG) | TMARI_RS04110 | histidinol‑phosphatase |
| * | NC_021214 | 769,660 | 0 | G | T | 25.0% | 316.6 / 64.9 | 168 | S296* (TCG→TAG) | TMARI_RS03820 | S41 family peptidase |
| Marginal new junction evidence (lowest skew 10 of 39 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_021214 | = 141342 | 453 (1.310) | 45 (0.130) | 22/448 | 16.1 | 9.0% | coding (409/1233 nt) | TMARI_RS00650 | transposase |
| ? | NC_021214 | 141347 = | 454 (1.320) | coding (404/1233 nt) | TMARI_RS00650 | transposase | |||||
| * | ? | NC_021214 | = 1829160 | 3658 (10.570) | 12 (0.040) | 12/434 | 20.3 | 0.34% | coding (524/1485 nt) | TMARI_RS09450 | sugar ABC transporter ATP‑binding protein |
| ? | NC_021214 | = 1829167 | 3490 (10.460) | coding (517/1485 nt) | TMARI_RS09450 | sugar ABC transporter ATP‑binding protein | |||||
| * | ? | NC_021214 | 1327950 = | 348 (1.010) | 12 (0.040) | 6/430 | 24.1 | 3.5% | coding (408/762 nt) | TMARI_RS06635 | ABC transporter permease |
| ? | NC_021214 | 1328134 = | 335 (1.010) | coding (592/762 nt) | TMARI_RS06635 | ABC transporter permease | |||||
| * | ? | NC_021214 | 814725 = | 306 (0.880) | 12 (0.040) | 6/440 | 24.4 | 3.6% | coding (243/639 nt) | TMARI_RS04050 | transporter |
| ? | NC_021214 | 814876 = | 335 (0.990) | coding (394/639 nt) | TMARI_RS04050 | transporter | |||||
| * | ? | NC_021214 | = 560268 | 313 (0.900) | 10 (0.030) | 5/432 | 25.0 | 3.3% | coding (172/618 nt) | TMARI_RS02740 | hypothetical protein |
| ? | NC_021214 | = 560304 | 277 (0.830) | coding (208/618 nt) | TMARI_RS02740 | hypothetical protein | |||||
| * | ? | NC_021214 | 454940 = | 323 (0.930) | 6 (0.020) | 5/434 | 25.0 | 1.8% | coding (1064/1104 nt) | TMARI_RS02195 | pectate trisaccharide‑lyase |
| ? | NC_021214 | 1085145 = | 326 (0.980) | coding (728/759 nt) | TMARI_RS05450 | DeoR/GlpR transcriptional regulator | |||||
| * | ? | NC_021214 | = 1335343 | 369 (1.070) | 4 (0.010) | 4/410 | 25.1 | 1.2% | intergenic (+50/‑27) | TMARI_RS06690/TMARI_RS06695 | hypothetical protein/Cys‑rich RiPP peptide |
| ? | NC_021214 | = 1335323 | 342 (1.090) | intergenic (+30/‑47) | TMARI_RS06690/TMARI_RS06695 | hypothetical protein/Cys‑rich RiPP peptide | |||||
| * | ? | NC_021214 | 1824914 = | 4107 (11.870) | 16 (0.050) | 5/440 | 25.2 | 0.42% | coding (2255/2532 nt) | TMARI_RS09435 | pullulanase |
| ? | NC_021214 | 1825106 = | 3543 (10.480) | coding (2447/2532 nt) | TMARI_RS09435 | pullulanase | |||||
| * | ? | NC_021214 | 1020436 = | 345 (1.000) | 6 (0.020) | 5/438 | 25.2 | 1.8% | coding (16/555 nt) | TMARI_RS05115 | diguanylate cyclase |
| ? | NC_021214 | = 1020432 | 336 (1.000) | coding (20/555 nt) | TMARI_RS05115 | diguanylate cyclase | |||||
| * | ? | NC_021214 | = 22265 | 285 (0.820) | 6 (0.020) | 5/440 | 25.2 | 2.1% | coding (1123/1929 nt) | TMARI_RS00100 | laminarinase |
| ? | NC_021214 | = 22484 | 289 (0.850) | coding (904/1929 nt) | TMARI_RS00100 | laminarinase | |||||