mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 51 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,606,322 | 1 | . | G | 63.6% | 121.6 / 85.8 | 55 | noncoding (80/87 nt) | leuQ | tRNA‑Leu |
| * | NC_000913 | 2,727,022 | 0 | T | A | 50.0% | ‑6.2 / 13.0 | 10 | noncoding (2163/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,727,033 | 0 | C | A | 45.5% | ‑5.9 / 12.1 | 11 | noncoding (2152/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,727,003 | 1 | . | C | 37.5% | ‑6.7 / 11.0 | 8 | noncoding (2182/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 624,598 | 0 | A | T | 36.4% | 64.2 / 11.1 | 46 | intergenic (‑88/‑287) | fepB/entC | ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC |
| * | NC_000913 | 915,213 | 0 | A | T | 36.0% | 55.4 / 12.3 | 51 | intergenic (‑356/+139) | lysO/aqpZ | L‑lysine exporter/water channel AqpZ |
| * | NC_000913 | 843,196 | 0 | T | G | 33.9% | 64.7 / 18.0 | 56 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase |
| * | NC_000913 | 361,311 | 0 | C | A | 33.9% | 194.0 / 18.4 | 131 | E184* (GAA→TAA) | lacA | galactoside O‑acetyltransferase |
| * | NC_000913 | 224,771 | 0 | C | G | 33.8% | 1451.8 / inf | 751 | noncoding (1001/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 1,164,564 | 0 | G | T | 32.1% | 171.2 / 13.9 | 111 | G157V (GGA→GTA) | nagZ | beta‑N‑acetylhexosaminidase |
| * | NC_000913 | 4,244,613 | 0 | G | T | 30.9% | 98.7 / 11.0 | 68 | Q155K (CAA→AAA) | malF | maltose ABC transporter membrane subunit MalF |
| * | NC_000913 | 2,185,429 | 0 | T | G | 30.3% | 133.0 / 21.5 | 66 | intergenic (‑128/+95) | thiM/rcnR | hydroxyethylthiazole kinase/DNA‑binding transcriptional repressor RcnR |
| * | NC_000913 | 361,320 | 0 | C | A | 30.2% | 204.8 / 20.7 | 126 | V181F (GTT→TTT) | lacA | galactoside O‑acetyltransferase |
| * | NC_000913 | 151,727 | 0 | G | T | 27.6% | 176.3 / 12.6 | 98 | P169T (CCG→ACG) | yadL | putative fimbrial protein YadL |
| * | NC_000913 | 4,038,738 | 0 | C | T | 27.2% | 852.9 / 284.7 | 371 | noncoding (1220/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 2,730,908 | 0 | A | T | 26.6% | 970.0 / inf | 407 | noncoding (250/1542 nt) | rrsG | 16S ribosomal RNA |
| * | NC_000913 | 224,809 | 0 | G | C | 26.5% | 1329.3 / inf | 586 | noncoding (1039/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 4,038,805 | 0 | G | A | 26.2% | 323.4 / 112.6 | 160 | noncoding (1287/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,065,205 | 0 | C | A | 25.9% | 307.0 / 25.3 | 140 | A188S (GCC→TCC) | yihO | putative sulfoquinovose transporter |
| * | NC_000913 | 2,730,894 | 0 | G | C | 25.8% | 910.3 / 316.3 | 374 | noncoding (264/1542 nt) | rrsG | 16S ribosomal RNA |
| Marginal new junction evidence (lowest skew 10 of 78 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4175464 | 119 (1.070) | 10 (0.150) +55 bp |
5/170 | 2.9 | 12.1% | intergenic (+1/‑8) | thrU/tyrU | tRNA‑Thr/tRNA‑Tyr |
| ? | NC_000913 | 4175475 = | 121 (1.090) | noncoding (4/85 nt) | tyrU | tRNA‑Tyr | |||||
| * | ? | NC_000913 | 374922 = | 153 (1.380) | 13 (0.160) | 7/206 | 2.9 | 12.7% | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377430 = | 66 (0.810) | intergenic (+119/+105) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 374963 | 151 (1.360) | 17 (0.220) | 6/194 | 3.0 | 15.7% | intergenic (+82/‑496) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | = 377487 | 79 (1.030) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 340035 = | 119 (1.070) | 31 (0.280) | 10/278 | 3.0 | 16.8% | coding (267/321 nt) | yahH | putative uncharacterized protein YahH |
| ? | NC_000913 | 377322 = | 190 (1.720) | intergenic (+11/+213) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 374958 | 151 (1.360) | 10 (0.120) | 6/206 | 3.1 | 10.2% | intergenic (+77/‑501) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | = 377392 | 66 (0.810) | intergenic (+81/+143) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 4373287 = | 93 (0.840) | 149 (1.440) | 8/260 | 3.2 | 31.8% | intergenic (+125/+78) | yjeI/yjeJ | DUF4156 domain‑containing lipoprotein YjeI/protein YjeJ |
| ? | NC_000913 | 4374507 = | 554 (5.370) | intergenic (‑273/+122) | yjeJ/epmB | protein YjeJ/lysine 2,3‑aminomutase | |||||
| * | ? | NC_000913 | = 375165 | 187 (1.680) | 5 (0.060) | 5/196 | 3.3 | 4.6% | intergenic (+284/‑294) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | = 377487 | 79 (1.020) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 375064 | 164 (1.480) | 7 (0.090) | 5/196 | 3.3 | 6.7% | intergenic (+183/‑395) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | = 377487 | 79 (1.020) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 4037260 = | 5 (0.040) | 16 (0.190) +35 bp |
5/210 | 3.5 | 28.4% | noncoding (1/76 nt) | alaT | tRNA‑Ala |
| ? | NC_000913 | = 4175818 | 103 (0.930) | noncoding (65/76 nt) | thrT | tRNA‑Thr | |||||
| * | ? | NC_000913 | = 375246 | 159 (1.430) | 8 (0.090) | 6/236 | 3.5 | 7.0% | intergenic (+365/‑213) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | = 377507 | 80 (0.860) | intergenic (+196/+28) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||