mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 59 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,967,999 | 0 | A | . | 68.7% | 168.2 / 186.1 | 115 | coding (84/1104 nt) | rfe | UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase |
| * | NC_000913 | 4,037,265 | 0 | T | C | 66.7% | 53.1 / 20.7 | 27 | noncoding (6/76 nt) | alaT | tRNA‑Ala |
| * | NC_000913 | 2,726,651 | 0 | T | G | 63.6% | ‑6.2 / 15.9 | 22 | noncoding (2534/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,727,033 | 0 | C | A | 60.0% | ‑5.1 / 13.0 | 15 | noncoding (2152/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,726,555 | 0 | C | A | 52.6% | ‑4.5 / 27.7 | 19 | noncoding (2630/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,726,560 | 0 | C | T | 52.6% | ‑4.5 / 23.5 | 19 | noncoding (2625/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 4,037,291 | 0 | T | C | 48.1% | 14.4 / 37.3 | 27 | noncoding (32/76 nt) | alaT | tRNA‑Ala |
| * | NC_000913 | 2,727,004 | 0 | A | C | 45.5% | ‑6.4 / 10.0 | 12 | noncoding (2181/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,727,035 | 0 | G | A | 45.5% | ‑5.1 / 10.4 | 15 | noncoding (2150/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 224,771 | 0 | C | G | 37.6% | 1476.6 / inf | 859 | noncoding (1001/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 4,037,308 | 0 | T | A | 37.5% | ‑5.5 / 25.9 | 24 | noncoding (49/76 nt) | alaT | tRNA‑Ala |
| * | NC_000913 | 2,965,101 | 0 | T | G | 37.3% | 92.4 / 23.9 | 75 | N19H (AAC→CAC) | thyA | thymidylate synthase |
| * | NC_000913 | 2,726,996 | 0 | A | . | 36.4% | ‑6.3 / 11.5 | 12 | noncoding (2189/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 2,727,003 | 1 | . | C | 33.3% | ‑5.9 / 15.6 | 12 | noncoding (2182/2904 nt) | rrlG | 23S ribosomal RNA |
| * | NC_000913 | 4,086,955 | 0 | C | A | 31.1% | 149.8 / 14.3 | 121 | intergenic (+106/‑47) | fdhD/yiiG | sulfurtransferase for molybdenum cofactor sulfuration/DUF3829 domain‑containing lipoprotein YiiG |
| * | NC_000913 | 4,065,205 | 0 | C | A | 30.4% | 182.8 / 24.0 | 112 | A188S (GCC→TCC) | yihO | putative sulfoquinovose transporter |
| * | NC_000913 | 2,965,147 | 0 | C | A | 29.8% | 126.0 / 18.3 | 67 | Q3H (CAG→CAT) | thyA | thymidylate synthase |
| * | NC_000913 | 4,086,948 | 0 | C | A | 29.8% | 177.6 / 13.4 | 129 | intergenic (+99/‑54) | fdhD/yiiG | sulfurtransferase for molybdenum cofactor sulfuration/DUF3829 domain‑containing lipoprotein YiiG |
| * | NC_000913 | 843,247 | 0 | C | A | 29.0% | 124.6 / 10.2 | 62 | R306S (CGC→AGC) | rlmF | 23S rRNA m(6)A1618 methyltransferase |
| * | NC_000913 | 2,965,105 | 0 | C | G | 28.3% | 120.9 / 15.7 | 73 | Q17H (CAG→CAC) | thyA | thymidylate synthase |
| Marginal new junction evidence (lowest skew 10 of 86 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2731059 | 413 (3.460) | 34 (0.380) +35 bp |
13/210 | 1.8 | 9.9% | noncoding (99/1542 nt) | rrsG | 16S ribosomal RNA |
| ? | NC_000913 | = 4035603 | NA (NA) | noncoding (73/1542 nt) | rrsA | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | = 1287084 | 233 (1.950) | 23 (0.230) | 9/240 | 2.9 | 10.5% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | NC_000913 | 1287557 = | 191 (1.870) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | = 374958 | 224 (1.880) | 14 (0.160) | 7/206 | 3.0 | 8.4% | intergenic (+77/‑501) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | = 377392 | 140 (1.600) | intergenic (+81/+143) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 374963 | 221 (1.850) | 18 (0.220) | 6/194 | 3.1 | 10.9% | intergenic (+82/‑496) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | = 377487 | 141 (1.710) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 374922 = | 174 (1.460) | 15 (0.130) | 9/264 | 3.2 | 7.4% | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377329 = | 213 (1.890) | intergenic (+18/+206) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 374922 = | 174 (1.460) | 9 (0.100) | 6/206 | 3.3 | 6.3% | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377430 = | 139 (1.590) | intergenic (+119/+105) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 375225 = | 159 (1.330) | 17 (0.170) | 7/236 | 3.4 | 10.4% | intergenic (+344/‑234) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377530 = | 159 (1.580) | intergenic (+219/+5) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 340006 | 74 (0.620) | 8 (0.080) +29 bp |
6/220 | 3.5 | 7.4% | coding (238/321 nt) | yahH | putative uncharacterized protein YahH |
| ? | NC_000913 | = 377529 | 177 (1.480) | intergenic (+218/+6) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 1907626 = | 228 (1.910) | 32 (0.270) | 8/280 | 3.6 | 12.3% | intergenic (‑35/+635) | yobF/yebO | DUF2527 domain‑containing protein YobF/uncharacterized protein YebO |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1907489 | 290 (2.430) | 17 (0.140) | 8/280 | 3.6 | 5.5% | coding (103/144 nt) | yobF | DUF2527 domain‑containing protein YobF |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||