Frequency Filtering Thresholds

Minimum Cutoff:       Maximum Cutoff:

Ignored Genes

Enter gene(s) separated by ',' ex: tpoB,folD

Ignored Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details
1155695 1013252 SNP T→G
prfC, potF-I
peptide chain release factor 3/putrescine-binding protein intergenic (+77/+54)
1155756 1327127 SNP C→T
PP_16SE, PP_23SE
16S ribosomal RNA/23S ribosomal RNA intergenic (+97/‑196)
1161475 1821017 DEL Δ1 bp
PP_1624
group II intron-encoding maturase coding (738/1422 nt)
1592951 4743195 INS +C
gltA, yeiW
citrate synthase/putative oxidoreductase intergenic (+464/+288)
1592952 4743197 SNP A→G
gltA, yeiW
citrate synthase/putative oxidoreductase intergenic (+466/+286)
1592953 4743199 SNP C→T
gltA, yeiW
citrate synthase/putative oxidoreductase intergenic (+468/+284)
1592954 4743202 SNP C→T
gltA, yeiW
citrate synthase/putative oxidoreductase intergenic (+471/+281)
1592955 4743205 SNP C→G
gltA, yeiW
citrate synthase/putative oxidoreductase intergenic (+474/+278)
1592956 4743207 SUB 2 bp→CT
gltA, yeiW
citrate synthase/putative oxidoreductase intergenic (+476/+275)
1592957 4743221 SNP C→T
gltA, yeiW
citrate synthase/putative oxidoreductase intergenic (+490/+262)
1592958 4743223 SNP A→C
gltA, yeiW
citrate synthase/putative oxidoreductase intergenic (+492/+260)
1592959 4743226 SUB 2 bp→GC
gltA, yeiW
citrate synthase/putative oxidoreductase intergenic (+495/+256)
1592972 4160437 SNP A→C
PP_3661
membrane protein S161R (AGC→CGC)
1593482 4160432 SNP T→G
PP_3661
membrane protein L159R (CTG→CGG)
1595767 5309882 SNP A→C
PP_23SG
23S ribosomal RNA noncoding (2678/2902 nt)
1595771 5309945 SNP G→A
PP_23SG
23S ribosomal RNA noncoding (2615/2902 nt)
1595772 5309952 SNP G→A
PP_23SG
23S ribosomal RNA noncoding (2608/2902 nt)
1595773 5309954 SNP A→G
PP_23SG
23S ribosomal RNA noncoding (2606/2902 nt)
1595781 5310200 SNP C→T
PP_23SG
23S ribosomal RNA noncoding (2360/2902 nt)
1596564 697097 SNP A→G
mmsA-I, PP_16SD
methylmalonate-semialdehyde dehydrogenase/16S ribosomal RNA intergenic (+21/‑730)
1597328 5309871 SNP T→C
PP_23SG
23S ribosomal RNA noncoding (2689/2902 nt)
1597329 5309878 SNP C→A
PP_23SG
23S ribosomal RNA noncoding (2682/2902 nt)
1597334 5309926 SNP C→A
PP_23SG
23S ribosomal RNA noncoding (2634/2902 nt)
1597649 697103 SNP T→G
mmsA-I, PP_16SD
methylmalonate-semialdehyde dehydrogenase/16S ribosomal RNA intergenic (+27/‑724)
1597749 1821021 SUB 2 bp→CT
PP_1624
group II intron-encoding maturase coding (742‑743/1422 nt)
1598052 5309864 SNP A→G
PP_23SG
23S ribosomal RNA noncoding (2696/2902 nt)
1598053 5309865 SNP C→T
PP_23SG
23S ribosomal RNA noncoding (2695/2902 nt)
1598054 5309870 SNP G→A
PP_23SG
23S ribosomal RNA noncoding (2690/2902 nt)
1598055 5309881 SNP A→T
PP_23SG
23S ribosomal RNA noncoding (2679/2902 nt)
1598056 5309893 SNP T→A
PP_23SG
23S ribosomal RNA noncoding (2667/2902 nt)
1598057 5309985 SNP A→G
PP_23SG
23S ribosomal RNA noncoding (2575/2902 nt)
1598058 5310003 SNP A→G
PP_23SG
23S ribosomal RNA noncoding (2557/2902 nt)
1598059 5310055 SNP T→C
PP_23SG
23S ribosomal RNA noncoding (2505/2902 nt)
1598071 5310199 SNP A→C
PP_23SG
23S ribosomal RNA noncoding (2361/2902 nt)
1598073 5310214 SNP T→C
PP_23SG
23S ribosomal RNA noncoding (2346/2902 nt)
1598078 5312251 SNP G→A
PP_23SG
23S ribosomal RNA noncoding (309/2902 nt)
1598079 5312252 SNP C→A
PP_23SG
23S ribosomal RNA noncoding (308/2902 nt)

Starting Strain Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details