Frequency Filtering Thresholds

Minimum Cutoff:       Maximum Cutoff:

Ignored Genes

Enter gene(s) separated by ',' ex: tpoB,folD

Ignored Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details
1919077 560880 SNP C→T
CIW80_RS03085, pilV
hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV intergenic (+62/+53)
1919078 794460 SNP C→T
dgcE
diguanylate cyclase A568V (GCG→GTG)
1919079 917427 INS +TT
yeiP, yeiQ
elongation factor P-like protein YeiP/mannitol dehydrogenase family protein intergenic (+130/‑91)
1919083 3196873 INS +GCGTAATCGGTT
ampC
BlaEC family class C beta-lactamase coding (944/1122 nt)
1919084 4870914 DEL Δ1 bp
dhaK, dhaR
dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR intergenic (‑110/‑118)
2114414 601295 SNP T→G
irp1
yersiniabactin polyketide synthase HMWP1 V1607G (GTC→GGC)
2114415 601302 SNP T→G
irp1
yersiniabactin polyketide synthase HMWP1 R1609R (CGT→CGG)
2114416 628478 DEL Δ1,286 bp
clbP
[clbP]
2114418 756115 SNP A→G
galE
UDP-glucose 4-epimerase GalE G181G (GGT→GGC)
2114514 2214419 SNP T→C
rpsL
30S ribosomal protein S12 K43R (AAA→AGA)
2114515 2320775 SNP C→T
CIW80_RS11675
DNA-processing protein DprA G274S (GGC→AGC)
2114521 2460581 SNP A→C
yhjY, tag
autotransporter outer membrane beta-barrel domain-containing protein/DNA-3-methyladenine glycosylase I intergenic (‑3/‑155)
2114553 2868740 SNP T→G
fdoH
formate dehydrogenase O subunit beta Q22P (CAG→CCG)
2114586 3424795 SNP A→C
yjiJ, yjiK
MFS transporter/YjiK family protein intergenic (‑41/+27)
2114602 3656188 SNP A→G
htrE
outer membrane usher protein S549P (TCC→CCC)
2114617 3792805 SNP A→G
fucP
L-fucose:H+ symporter permease Y421C (TAC→TGC)
2114658 457895 DEL Δ1 bp
CIW80_RS02445
DUF968 domain-containing protein pseudogene (287/997 nt)
2114659 2408862 DEL Δ1 bp
mdtF
multidrug efflux pump RND permease MdtF pseudogene (1098/3115 nt)
2114660 2590564 INS +TGGT
CIW80_RS26455
hypothetical protein coding (110/153 nt)
2114663 2840 INS +A
mok CDS, putative HTH domain protein (MarR-like)
–/– intergenic (‑419/+289)
2114664 2899 DEL Δ1 bp
mok CDS, putative HTH domain protein (MarR-like)
–/– intergenic (‑478/+230)
2114921 1633846 SNP T→G
yqeB
selenium-dependent molybdenum cofactor biosynthesis protein YqeB N253T (AAC→ACC)
2115254 2837 INS +A
mok CDS, putative HTH domain protein (MarR-like)
–/– intergenic (‑416/+292)
2115575 1535365 SNP A→C
fucI
L-fucose isomerase K35N (AAA→AAC)
2115600 3559837 DEL Δ2,343 bp
polB
DNA polymerase II coding (10‑2352/2352 nt)
2115602 3844426 DEL Δ1,036 bp
dinB
DNA polymerase IV coding (2‑1037/1056 nt)
2115610 4419926 SNP C→G
lysO, aqpZ
L-lysine exporter LysO/aquaporin Z intergenic (‑347/+147)
2115615 4844868 DEL Δ1,662 bp
umuD,umuC
[umuD],[umuC]
2116517 3811480 SNP G→T
CIW80_RS19090
hypothetical protein G122C (GGT→TGT)
2116607 4419920 SNP A→G
lysO, aqpZ
L-lysine exporter LysO/aquaporin Z intergenic (‑341/+153)

Starting Strain Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details