Frequency Filtering Thresholds

Minimum Cutoff:       Maximum Cutoff:

Ignored Genes

Enter gene(s) separated by ',' ex: tpoB,folD

Ignored Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details
1919077 560880 SNP C→T
CIW80_RS03085, pilV
 hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV intergenic (+62/+53)
1919078 794460 SNP C→T
dgcE
 diguanylate cyclase A568V (GCG→GTG)
1919079 917427 INS +TT
yeiP, yeiQ
 elongation factor P-like protein YeiP/mannitol dehydrogenase family protein intergenic (+130/‑91)
1919083 3196873 INS +GCGTAATCGGTT
ampC
 BlaEC family class C beta-lactamase coding (944/1122 nt)
1919084 4870914 DEL Δ1 bp
dhaK, dhaR
 dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR intergenic (‑110/‑118)
2114416 628478 DEL Δ1,286 bp
clbP
 [clbP]
2114418 756115 SNP A→G
galE
 UDP-glucose 4-epimerase GalE G181G (GGT→GGC)
2114514 2214419 SNP T→C
rpsL
 30S ribosomal protein S12 K43R (AAA→AGA)
2114515 2320775 SNP C→T
CIW80_RS11675
 DNA-processing protein DprA G274S (GGC→AGC)
2114521 2460581 SNP A→C
yhjY, tag
 autotransporter outer membrane beta-barrel domain-containing protein/DNA-3-methyladenine glycosylase I intergenic (‑3/‑155)
2114553 2868740 SNP T→G
fdoH
 formate dehydrogenase O subunit beta Q22P (CAG→CCG)
2114586 3424795 SNP A→C
yjiJ, yjiK
 MFS transporter/YjiK family protein intergenic (‑41/+27)
2114602 3656188 SNP A→G
htrE
 outer membrane usher protein S549P (TCC→CCC)
2114617 3792805 SNP A→G
fucP
 L-fucose:H+ symporter permease Y421C (TAC→TGC)
2114658 457895 DEL Δ1 bp
CIW80_RS02445
 DUF968 domain-containing protein pseudogene (287/997 nt)
2114659 2408862 DEL Δ1 bp
mdtF
 multidrug efflux pump RND permease MdtF pseudogene (1098/3115 nt)
2114660 2590564 INS +TGGT
CIW80_RS26455
 hypothetical protein coding (110/153 nt)
2114672 829441 SNP C→A
gatY, fbaB
 tagatose-bisphosphate aldolase subunit GatY/class I fructose-bisphosphate aldolase intergenic (‑30/+197)
2114729 4678047 SNP A→C
agn43, CIW80_RS23450
 autotransporter adhesin Ag43/hypothetical protein intergenic (+45/‑76)
2114764 1000431 SNP T→G
yfaL
 AIDA-I family autotransporter adhesin YfaL/EhaC D945A (GAC→GCC)
2114919 1535353 SNP G→T
fucI
 L-fucose isomerase M31I (ATG→ATT)
2114921 1633846 SNP T→G
yqeB
 selenium-dependent molybdenum cofactor biosynthesis protein YqeB N253T (AAC→ACC)
2115575 1535365 SNP A→C
fucI
 L-fucose isomerase K35N (AAA→AAC)
2115600 3559837 DEL Δ2,343 bp
polB
 DNA polymerase II coding (10‑2352/2352 nt)
2115602 3844426 DEL Δ1,036 bp
dinB
 DNA polymerase IV coding (2‑1037/1056 nt)
2115609 4419919 SNP C→G
lysO, aqpZ
 L-lysine exporter LysO/aquaporin Z intergenic (‑340/+154)
2115615 4844868 DEL Δ1,662 bp
umuD,umuC
 [umuD],[umuC]
2115941 2031 SNP G→A
putative rom (RNA I inhibition modulator protein), ompA
 –/– intergenic (‑235/‑1500)
2115942 3595 DEL Δ15 bp
IL2wt no signal
 [IL2wt no signal]
2115944 4809 INS +A
annotated as hok_sok locus, putative HTH domain protein
 –/– intergenic (‑174/+400)
2115945 4868 DEL Δ1 bp
annotated as hok_sok locus, putative HTH domain protein
 –/– intergenic (‑233/+341)
2115980 1213462 SNP A→C
eutE
 aldehyde dehydrogenase EutE L426R (CTG→CGG)
2116024 3762 SNP G→T
IL2wt no signal
 None E52* (GAA→TAA)
2116336 4806 INS +A
annotated as hok_sok locus, putative HTH domain protein
 –/– intergenic (‑171/+403)
2116951 5042676 SNP C→T
CIW80_RS25525
 EntS/YbdA MFS transporter S769S (AGC→AGT)
2116966 92 INS +A
putative HTH domain protein, uncharacterized protein
 –/– intergenic (‑44/‑113)

Starting Strain Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details