Pputida_dynamic_ALE: JE3692_NRELM9_static/dynamic_30 - Sample Meta Data
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Note: the reference genome BOP27 is a known variant of E. coli K12 MG1655 E. coli K12 MG1655.
| ALE, Flask, Isolate, Technical Replicate | Clonal or Population | ALE Sample Details | Base Media | Carbon Source(g/L) | Nitrogen Source(g/L) | Phosphorus Source(g/L) | Sulfur Source(g/L) | Calcium Source(g/L) | Supplement(g/L) | Temperature (Celsius) | Strain | Additional Strain Details | Taxonomy ID | Reference Genome |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A0 F0 I1 R1 | clonal | M9 | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | ||||
| A1 F83 I3 R1 | clonal | M9 | glucose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A2 F83 I3 R1 | clonal | M9 | glucose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A3 F81 I2 R1 | clonal | M9 | glucose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A4 F78 I3 R1 | clonal | M9 | glucose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A5 F53 I1 R1 | clonal | M9 | xylose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A6 F57 I3 R1 | clonal | M9 | xylose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A7 F62 I2 R1 | clonal | M9 | xylose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A8 F59 I2 R1 | clonal | M9 | xylose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A9 F65 I3 R1 | clonal | M9 | arabinose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A10 F67 I3 R1 | clonal | M9 | arabinose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A11 F71 I1 R1 | clonal | M9 | arabinose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A12 F70 I3 R1 | clonal | M9 | arabinose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A13 F87 I2 R1 | clonal | M9 | glucose(4),xylose(4),arabinose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A14 F87 I1 R1 | clonal | M9 | glucose(4),xylose(4),arabinose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A15 F91 I1 R1 | clonal | M9 | glucose(4),xylose(4),arabinose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A16 F83 I2 R1 | clonal | M9 | glucose(4),xylose(4),arabinose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A17 F89 I1 R1 | clonal | M9 | glucose(0.5),xylose(0.5),arabinose(0.5) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A18 F91 I2 R1 | clonal | M9 | glucose(0.5),xylose(0.5),arabinose(0.5) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A19 F93 I1 R1 | clonal | M9 | glucose(0.5),xylose(0.5),arabinose(0.5) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A20 F93 I3 R1 | clonal | M9 | glucose(0.5),xylose(0.5),arabinose(0.5) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A21 F68 I1 R1 | clonal | M9 | glucose(0.5),xylose(0.5),arabinose(0.5) or xylose (4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A22 F64 I2 R1 | clonal | M9 | glucose(0.5),xylose(0.5),arabinose(0.5) or xylose (4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A23 F64 I1 R1 | clonal | M9 | glucose(0.5),xylose(0.5),arabinose(0.5) or xylose (4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A24 F64 I1 R1 | clonal | M9 | glucose(0.5),xylose(0.5),arabinose(0.5) or xylose (4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A25 F53 I2 R1 | clonal | M9 | glucose(4) or xylose(4) or arabinose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A26 F59 I3 R1 | clonal | M9 | glucose(4) or xylose(4) or arabinose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A27 F59 I1 R1 | clonal | M9 | glucose(4) or xylose(4) or arabinose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb | |||
| A28 F59 I2 R1 | clonal | M9 | glucose(4) or xylose(4) or arabinose(4) | NH42SO4(2) | KH2PO4(3),Na2HPO4(6.8) | MgSO4(0.24) | CaCl2(0.1) | 30 | 160488 | P. putida KT2440 ∆hsdR::Bxb1int-attB ∆gcd::PxylE-araE1:Ptac-araC2D2A2B2E2 ∆ampC::PxylE*-xylE:Ptac-xylAB:talB:tktA ∆crc | /var/data/JE3692-4.gb |