Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F6 I2 R1	82	424.1	19537984	98.2%	19186300	137.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	AE015451_phaM1	6,011,161	T→C	intergenic (+90/+20)	xpt CDS (Xanthine phosphoribosyltransferase) → / ← PP_5266 CDS (putative acetyl‑CoA hydrolase family protein)	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	AE015451_phaM1	6,011,161	0	T	C	100.0%	1032.3 / NA	266	intergenic (+90/+20)	xpt CDS (Xanthine phosphoribosyltransferase)/PP_5266 CDS (putative acetyl‑CoA hydrolase family protein)	–/–
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (141/125); total (141/125)

Only 100 of 267 total aligned reads displayed.

CCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCTGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCTCCGGCCCCG  >  AE015451_phaM1/6011026‑6011296

ccGGGGGAAGTCGGGGGAAGGTGGTGTGGTCAGCTTCAGCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGACGCGAACCCTGTGCCGTACCTGTGGGAGCGGGCGTGCCcgcg                                                                                                                                      <  2:1570455/139‑1 (MQ=37)

       aaGACGGTGGAAGGTGGTGTGTTCAGGTTCTTCTAATAACCGCGACACCTGCTTCGCGGGAACGCCCCCACCCACAGGTGCAGCACTGGACTCGACCGCTGTCCCGTACCTGGGGGAGCGGGGGTGCCCGCTAATGGcc                                                                                                                               <  1:1052503/139‑1 (MQ=255)

                  aGGTGGTGTGGTCAGCTTCATCGATTAAACGCGACAGCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCACCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCtttt                                                                                                                    <  2:1507155/139‑1 (MQ=255)

                  aGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCtttt                                                                                                                    <  2:4066691/139‑1 (MQ=255)

                  aGGTGGTGTCGTCAGCTTCATGGAATACACGCGACACCTCCTTCCCGGCCACGCCCGCTCCCACAGGTGCTGCACAGGTCTCGAAGGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGATTGGCCGCAACCCtttt                                                                                                                    <  2:580049/139‑1 (MQ=25)

                      ggtgtggtCAGCTACATCGTATAAACGCTACACCTGCTTCGCGGGCACCCCCGAACCCACCGGTGCAGCACAGGTCTCTAACGCTGTGCCGTACGTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCt                                                                                                                <  2:2950640/139‑1 (MQ=37)

                                gCTTCATCTAATAAACGCAACACCTGCTTCGCGGGCACGCCCCCACCCACTGGTGCAGAACTGGTGTCTAACGCTGTGCCTTCCCTTTGGGTGGGGGCGTGCCCGCTAATGGCCGCAACCCTTTTATCTGGTTgccgcc                                                                                                      <  1:1410650/139‑1 (MQ=255)

                                      tCGATTAAACGCGACACGTGCTTCGCGGGCACGCCCGCACCCAGTGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGcccc                                                                                                <  1:1655039/139‑1 (MQ=37)

                                      tCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGcccc                                                                                                <  1:1574136/139‑1 (MQ=255)

                                         aaTAAACGCGACACCTGCTTCGCGGGCACCCCCGCTCCCCCAGGTGCCGCACAGGTCTCGCACCCTGTGCCGGACCGGTGGGTGCGGGCGTGCCCGCGAAATGCCGCAAACCTTTTATATGGTTTGCGCCACCCCCGcc                                                                                             >  2:4366734/1‑139 (MQ=255)

                                               cgcgACACCTGATTCGCGGGCACCCCCGATCCCACAGGTGCATCACAGTACTCGAACGGTGTGCCTTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCcaacaac                                                                                       <  1:860933/139‑1 (MQ=37)

                                                 cgACACCTGCTTCGCGGGCACGCCCGCTCCCTGAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCcaacaacaa                                                                                     <  2:3431410/139‑1 (MQ=255)

                                                 cgACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCcaacaacaa                                                                                     <  2:2735975/139‑1 (MQ=255)

                                                  taaacgtGCTTCGCGGGCACGCCGGCTCCCACTGGTCCACAACTGGAGTCAAACCGGGTGCGTAACGTGTGGGAGGGGGCGTGCCCGCTAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAg                                                                                    <  2:6025662/133‑1 (MQ=255)

                                                  gACACGTGGTGCGCGGGCACCCCCGCTCCCACAGGTGCAGCACAGGACTCGACCGGTGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAg                                                                                    <  2:7170405/139‑1 (MQ=37)

                                                  gACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCTAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAg                                                                                    <  2:3888387/139‑1 (MQ=255)

                                                  gACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAg                                                                                    <  2:765065/139‑1 (MQ=255)

                                                  gACACCTGATTCGGGGGCACGCCCGCTCCCACGGGTCCAGCACAGGACACGAAGGGGGTCCCGTACGTGGGGCAGCGGGCGGGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAg                                                                                    <  2:9562268/139‑1 (MQ=255)

                                                  caaacCTGCTTGGCGGGCACGCCCGCTCCCACAGGGGCAGCACAGGAAGCGAACGCTGTCCCGTACGTGTGGGAGCGGGCGTGCCCGCTAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAg                                                                                    <  2:8706773/136‑1 (MQ=37)

                                                       ctccTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTg                                                                               <  2:1888610/136‑1 (MQ=255)

                                                            tCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTaaa                                                                          <  1:1672538/139‑1 (MQ=255)

                                                            tCGCGGGCACCCCCGCTCCCACTGGTGCAGCACTGGTCTCGAACGGTGGGCGGTACCTGGGGGAGGGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTaaa                                                                          <  1:2688197/139‑1 (MQ=255)

                                                             cgggggCCCCCCCGCACCCACTGGGGCACCACTGGACGCTACCGGTGGGCGGTCCGTGGGGGCGCGGGCGTGCCCGCTAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAg                                                                         <  1:5384718/136‑1 (MQ=255)

                                                             cgcgGGCACGCCGGCTCCCACGGGTGCAGCACAGGTAGCTAACGCTGGGCCGTACGGGTGGGAGGGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAg                                                                         <  2:5880409/139‑1 (MQ=255)

                                                             cccgGCCACCCCCCCACCCACAGGTGCACCACAGGTCGCGAACGCTGTCCGGTACCTGGGGGAGCGGGGGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAg                                                                         <  1:4360426/137‑1 (MQ=255)

                                                               gggccACGCCGGCGCCCACTGGTGCTGAACTGGACACGACCGGTGTGCCGTCCGGGGGGGGGGGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGtt                                                                       <  1:6566148/135‑1 (MQ=255)

                                                                     cGCCCGCTCCCACTGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTcttctt                                                                 <  1:3299284/139‑1 (MQ=255)

                                                                              ccACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCt                                                        >  2:4271929/1‑139 (MQ=255)

                                                                                acaGGTGCAGCACAGGACGCGACCGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGc                                                      <  2:6250190/139‑1 (MQ=255)

                                                                                acaGGTGAACCACAGTACTCGAACGCTGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGc                                                      <  2:4973082/139‑1 (MQ=38)

                                                                                    ggcctccacaGGTATCTAACCCTGTCCCGTACCTGTGGCAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCt                                                  <  2:6847675/133‑1 (MQ=255)

                                                                                        agcaCAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCcaacaaca                                                                                      <  1:1371457/99‑1 (MQ=255)

                                                                                        agcaCAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCcaacaaca                                                                                      >  2:1371326/1‑99 (MQ=255)

                                                                                        agcaCAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCcaacaaca                                                                                      <  1:987094/99‑1 (MQ=255)

                                                                                         gcaCAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGcccc                                             >  1:663502/1‑139 (MQ=255)

                                                                                         gcaCAGGTCTCGAACCCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCTACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGcccc                                             <  2:2414900/139‑1 (MQ=255)

                                                                                           acaGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAg                                                                         >  2:3252061/1‑109 (MQ=255)

                                                                                             cggTCGCGAACGGGGTGCCGAACCTGTGGGCGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACt                                         <  2:9708656/138‑1 (MQ=255)

                                                                                             aGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACt                                         >  2:8391033/1‑139 (MQ=255)

                                                                                               gTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGc                                       >  1:4927798/1‑139 (MQ=255)

                                                                                                 ctcGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCAt                                     >  1:8417327/1‑139 (MQ=255)

                                                                                                 ctcGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCAt                                     >  2:8782397/1‑139 (MQ=255)

                                                                                                 ctcGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCAt                                     >  2:8785610/1‑139 (MQ=255)

                                                                                                  tcGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATc                                    >  1:1205498/1‑139 (MQ=255)

                                                                                                  tcGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATc                                    >  1:3808549/1‑139 (MQ=255)

                                                                                                  tcGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATc                                    >  2:8693878/1‑139 (MQ=255)

                                                                                                  tcGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATc                                    >  1:1812605/1‑139 (MQ=255)

                                                                                                       cGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCGCCTGCGGCTGCCCCAACTGCATCCGccc                               >  2:2127209/1‑139 (MQ=255)

                                                                                                       cGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGccc                               >  1:7969576/1‑139 (MQ=255)

                                                                                                         cTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCa                             <  1:3659613/139‑1 (MQ=255)

                                                                                                          tgtgCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAg                            <  2:1105769/139‑1 (MQ=255)

                                                                                                           ttgCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCTCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAgg                           <  2:1242458/138‑1 (MQ=255)

                                                                                                           gtgCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAgg                           <  2:5781426/139‑1 (MQ=255)

                                                                                                           gtgCCGTACCTGGGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAgg                           <  2:2244934/139‑1 (MQ=255)

                                                                                                           gtccggTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAgg                           <  2:8223691/134‑1 (MQ=255)

                                                                                                           gtcccGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAgg                           <  2:3136206/136‑1 (MQ=255)

                                                                                                            tgCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAg                                                                         <  1:4139510/92‑1 (MQ=255)

                                                                                                            tgCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTcttctt                                                                 >  1:2360382/1‑100 (MQ=255)

                                                                                                            tgCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGc                                       >  2:9069102/1‑126 (MQ=255)

                                                                                                            tgCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGc                                       <  1:9069102/126‑1 (MQ=255)

                                                                                                            tgCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGt                          <  2:1732692/139‑1 (MQ=255)

                                                                                                            tgCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGt                          >  2:5537648/1‑139 (MQ=255)

                                                                                                            tgCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGt                          >  2:1398066/1‑139 (MQ=255)

                                                                                                                   ccTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTc                   <  1:4271929/139‑1 (MQ=255)

                                                                                                                    cTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTcn                  >  1:8932050/1‑138 (MQ=255)

                                                                                                                       tgGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAc               >  2:2877788/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCa                             <  2:4399920/123‑1 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  2:773460/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  2:8405678/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  2:8595634/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  2:7342452/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  1:3958646/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  2:9208731/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             <  2:926062/139‑1 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  1:1296425/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  1:2615283/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  2:1474747/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  1:7564073/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  2:518157/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  1:7029974/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  1:4291905/1‑139 (MQ=255)

                                                                                                                         ggAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAccc             >  2:3167890/1‑139 (MQ=255)

                                                                                                                           aGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCt           >  1:3217488/1‑139 (MQ=255)

                                                                                                                           aGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCt           >  1:338680/1‑139 (MQ=255)

                                                                                                                           aGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCt           >  1:6083899/1‑139 (MQ=255)

                                                                                                                           aGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCt           >  1:4491009/1‑139 (MQ=255)

                                                                                                                           aGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCt           >  1:4609798/1‑139 (MQ=255)

                                                                                                                            gCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCTc          >  1:9038330/1‑139 (MQ=255)

                                                                                                                              gggCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCTCCg        >  2:8288628/1‑139 (MQ=255)

                                                                                                                                gCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTa                                                                            >  2:4754499/1‑69 (MQ=255)

                                                                                                                                gCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCTCCGGc      >  2:2792361/1‑139 (MQ=255)

                                                                                                                                gCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCTCCGGc      >  2:5938618/1‑139 (MQ=255)

                                                                                                                                 cGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAg                                                                         <  2:8136755/71‑1 (MQ=255)

                                                                                                                                 cGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAg                                                                         >  1:305463/1‑71 (MQ=255)

                                                                                                                                 cGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCTCCGGcc     >  2:8930175/1‑139 (MQ=255)

                                                                                                                                 cGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCTCCGGcc     >  1:6810782/1‑139 (MQ=255)

                                                                                                                                  gTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCTCCGGccc    >  1:4611540/1‑139 (MQ=255)

                                                                                                                                  gTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCTCCGGccc    >  1:6003318/1‑139 (MQ=255)

                                                                                                                                  gTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCTCCGGccc    <  2:6318050/139‑1 (MQ=255)

                                                                                                                                   tGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCTCCGGcccc   <  2:2330388/139‑1 (MQ=255)

CCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCTGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCTCCGGCCCCG  >  AE015451_phaM1/6011026‑6011296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A