Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A20 F4 I1 R1
|
86 |
415.0 |
19624302 |
98.4% |
19310313 |
137.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
AE015451_phaM1 |
6,159,202 |
Δ6,596 bp |
|
PP_5404 CDS (Transposition protein_ TnsC‑related protein)–PP_5407 CDS (Transposition protein_ TnsD‑related protein) |
PP_5404 CDS (Transposition protein_ TnsC‑related protein), PP_5405 CDS (transposase), PP_5406 CDS (transposase), PP_5407 CDS (Transposition protein_ TnsD‑related protein) |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
AE015451_phaM1 |
6159202 |
6165797 |
6596 |
1016 [0] |
[0] 1018 |
PP_5404 CDS (Transposition protein_ TnsC‑related protein)–PP_5407 CDS (Transposition protein_ TnsD‑related protein) |
PP_5404 CDS (Transposition protein_ TnsC‑related protein),PP_5405 CDS (transposase),PP_5406 CDS (transposase),PP_5407 CDS (Transposition protein_ TnsD‑related protein) |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AE015451_phaM1 |
= 6159201 | 0 (0.000) | 995 (2.290) |
129/268 |
0.0 |
100% |
intergenic (+21/+2) |
PP_5403 CDS (conserved protein of unknown function)/PP_5404 CDS (Transposition protein_ TnsC‑related protein) |
–/– |
| ? | AE015451_phaM1 |
6165798 = |
0 (0.000) | intergenic (+3/+591) |
PP_5407 CDS (Transposition protein_ TnsD‑related protein)/PP_5408 CDS (conserved protein of unknown function) |
–/– |
GATK/CNVnator alignment
N/A
