Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F17 I1 R1 56 89.2 4010200 98.4% 3946036 146.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947_CJ‑RC 4,875,480 Δ756 bp coding (1‑756/756 nt) PP_4283 ← GntR family transcriptional regulator

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947_CJ‑RC 4875480 4876235 756 97 [0] [0] 97 PP_4283 GntR family transcriptional regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947_CJ‑RC = 48754790 (0.000)97 (1.050) 75/292 0.2 100% intergenic (‑157/+1) aqpZ/PP_4283 aquaporin Z/GntR family transcriptional regulator
?NC_002947_CJ‑RC 4876236 = 0 (0.000)intergenic (‑1/‑280) PP_4283/PP_4284 GntR family transcriptional regulator/transporter

GATK/CNVnator alignment

N/A