Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A4 F27 I1 R1 | 56 | 84.2 | 3463790 | 98.6% | 3415296 | 146.5 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947_CJ‑RC | 5,398,626 | Δ27,259 bp | [hsdM]–[PP_4763] | 22 genes [hsdM], hsdS, PP_5711, PP_4743, PP_4745, PP_4746, PP_4748, PP_4749, PP_4750, PP_4751, PP_4752, stcD, PP_4754, PP_4755, gabP‑V, gudD, PP_4758, PP_4759, PP_4760, PP_4761, tesB, [PP_4763] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947_CJ‑RC | 5398626 | 5425884 | 27259 | 54 [0] | [0] 55 | [hsdM]–[PP_4763] | [hsdM],hsdS,PP_5711,PP_4743,PP_4745,PP_4746,PP_4748,PP_4749,PP_4750,PP_4751,PP_4752,stcD,PP_4754,PP_4755,gabP‑V,gudD,PP_4758,PP_4759,PP_4760,PP_4761,tesB,[PP_4763] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947_CJ‑RC | = 5398625 | 0 (0.000) | 52 (0.650) | 47/288 | 0.9 | 100% | coding (36/1218 nt) | hsdM | type I restriction modification system methylase |
| ? | NC_002947_CJ‑RC | 5425885 = | 0 (0.000) | coding (336/537 nt) | PP_4763 | acetyltransferase | |||||
