Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F14 I1 R1 58 76.7 3323998 98.6% 3277462 146.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947_CJ‑RC 5,399,905 Δ12,245 bp [hsdS]–[stcD] [hsdS], PP_5711, PP_4743, PP_4745, PP_4746, PP_4748, PP_4749, PP_4750, PP_4751, PP_4752, [stcD]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947_CJ‑RC 5399905 5412149 12245 76 [0] [0] 76 [hsdS]–[stcD] [hsdS],PP_5711,PP_4743,PP_4745,PP_4746,PP_4748,PP_4749,PP_4750,PP_4751,PP_4752,[stcD]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947_CJ‑RC = 53999040 (0.000)76 (0.980) 60/292 0.3 100% coding (101/1731 nt) hsdS type I restriction modification system specificity protein
?NC_002947_CJ‑RC 5412150 = 0 (0.000)coding (1541/2037 nt) stcD N‑methylproline demethylase

GATK/CNVnator alignment

N/A