Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F13 I0 R1
|
213 |
60.4 |
2554362 |
98.6% |
2518600 |
147.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,769,141 |
A→T |
44.4% |
N356I (AAT→ATT) |
tpaK → |
probable terephthalate transporter, MFS superfamily protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,769,141 | 0 | A | T | 44.4%
| 16.5
/ 66.1
| 54 | N356I (AAT→ATT) | tpaK | probable terephthalate transporter, MFS superfamily protein |
| Reads supporting (aligned to +/- strand): ref base A (15/15); new base T (11/13); total (26/28) |
| Fisher's exact test for biased strand distribution p-value = 7.91e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATCGCCGCTGCATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGG > NC_002947_CJ‑RC/4768996‑4769287
|
aTCGCCGCTGCATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑tttt > 3:125997/1‑149 (MQ=255)
ccgcTGCATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑tttttttt > 8:96373/1‑149 (MQ=255)
ccgcTGCATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑Attttttt > 5:240024/1‑149 (MQ=255)
gcTGCATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGc < 1:111277/149‑1 (MQ=255)
cATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTTCGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCgggg > 3:33328/1‑149 (MQ=255)
cATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCgggg < 8:293555/149‑1 (MQ=255)
cATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCgg < 4:125997/147‑1 (MQ=255)
cATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCgggg < 6:240024/149‑1 (MQ=255)
aTTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCggggg > 5:204269/1‑149 (MQ=255)
tttGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCggggg > 8:310051/1‑148 (MQ=255)
gTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCt < 6:231053/148‑1 (MQ=255)
tCACCGGGCCCTGTATGGACCGACTCGGCGCGAACGTCCCCCTCGGAACCGTGTATGTCGACGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCGTTACGGCGCGGTGGTGGGTACTAATGACGGCCA‑TTTTTTTTGCGGGGATcgg > 8:139981/1‑146 (MQ=255)
cACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCa > 6:131814/1‑149 (MQ=255)
gCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCg < 1:174008/149‑1 (MQ=255)
gCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCg < 7:159367/149‑1 (MQ=255)
cccTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCgg < 4:107924/149‑1 (MQ=255)
cTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTg < 1:126378/149‑1 (MQ=255)
tGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTg > 4:116414/1‑148 (MQ=255)
tATGGACCGACTCGGCGCGTTCGTCACCCTCGGAACCGTTTATGTCGTCGGATTAGCAATCGTTGCTCTGTCCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGTCGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGAc < 7:139981/149‑1 (MQ=255)
ccGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACagaa > 6:60294/1‑147 (MQ=255)
cagACTCGGCGCGTACGTCACACTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACagaa > 8:325782/3‑147 (MQ=255)
aCTCGGCGGGTACGTCACCCTCGGAAGCGTTTATGTCGTCGGATTCGCATTCGTTGGGCTGACCGGTGTCGCCTTTTGGGCGCGGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACTGAAGAGcc < 5:184200/149‑1 (MQ=255)
cTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCt < 4:33328/149‑1 (MQ=255)
ggCGCGTACGTCACCCTCGGAACCGTTTGTGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCa > 6:13981/1‑148 (MQ=255)
cTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGgt > 4:40640/1‑149 (MQ=255)
cTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGgt > 8:50763/1‑149 (MQ=255)
cTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGgt > 8:45854/1‑149 (MQ=255)
ggAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGgtg < 4:173822/147‑1 (MQ=255)
ggAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGtt < 8:245696/149‑1 (MQ=255)
ccGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGAGTTCTa > 4:55878/1‑148 (MQ=255)
cGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATc < 7:300522/149‑1 (MQ=255)
tcgtcgGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACGcc > 1:294030/1‑148 (MQ=255)
gtcgGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGAt < 7:45910/149‑1 (MQ=255)
tcgGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTAATCGCGCTGTCCGCGGTGTTCTATCAGACACCGATg > 5:162453/1‑149 (MQ=255)
cgGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGc > 5:122987/1‑149 (MQ=255)
ttCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTc < 8:68923/149‑1 (MQ=255)
gCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCAc > 2:122897/1‑149 (MQ=255)
ttGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGtt < 6:204269/149‑1 (MQ=255)
gcgcgcaCCGGTGCCCCCTTAACGGCGCCGTTGGGGGTCCTTTTCA‑GGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTgg < 1:40077/142‑1 (MQ=255)
gcgcTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTg < 3:180593/148‑1 (MQ=255)
aCCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATgg < 3:40640/147‑1 (MQ=255)
tgtCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTgg < 5:131814/149‑1 (MQ=255)
ggCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGgccgcc < 6:186878/149‑1 (MQ=255)
gcgcCGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCt > 5:199303/1‑149 (MQ=255)
ccGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTcgg > 8:258464/1‑149 (MQ=255)
ccGTTGTGGGTCATATTGACGGCCA‑ATTTTTTTGCGTTGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGTTGTTCTATCCGACAACGATGCGGTCCACCGGGGTTGGATGTGCGTTGGGTGTTGGCCGCCTagg > 8:253893/1‑149 (MQ=255)
cGTTGTGGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATACGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTcggc < 5:13981/149‑1 (MQ=255)
gTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTcggcg < 6:62867/149‑1 (MQ=255)
gtgGGTCCTATTGACGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCa > 7:46016/1‑149 (MQ=255)
tATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCggg > 4:165781/1‑149 (MQ=255)
aTTGACGGCCATTTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCggg > 2:241681/1‑149 (MQ=255)
aCGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACGCCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGAt < 2:294030/149‑1 (MQ=255)
aCGGCCA‑TTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCAACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGAt > 2:198998/1‑149 (MQ=255)
aCGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGa < 1:159920/148‑1 (MQ=255)
ccA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATcgcg < 5:60294/149‑1 (MQ=255)
cA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCgg > 8:273101/1‑149 (MQ=255)
|
ATCGCCGCTGCATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCA‑ATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGG > NC_002947_CJ‑RC/4768996‑4769287
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATCGCCGCTGCATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCAATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCG > NC_002947_CJ‑RC/4768995‑4769290
|
CATCGCCGCTGCATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCATTTTT > NB501016:282:H2V7GAFX2:2:11305:24094:6890/1‑151 (MQ=60)
GCCGCTGCATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCAATTTTTTTT > NB501016:282:H2V7GAFX2:3:21506:8475:19676/1‑151 (MQ=60)
CGCTGCATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCATTTTTTTTGCG < NB501016:282:H2V7GAFX2:1:11212:9695:14748/151‑1 (MQ=60)
GCATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTTCGGCGCCGTTGTGGGTCCTATTGTCGGCCATTTTTTTTGCGGGGG > NB501016:282:H2V7GAFX2:2:11108:21930:14522/1‑151 (MQ=60)
CATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTAGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCAATTTTTTTGCGGGGGT > NB501016:282:H2V7GAFX2:3:21410:25487:12615/1‑151 (MQ=60)
GGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCATTTTTTTTGCGGGGGTCTGCATCAGCGG < NB501016:282:H2V7GAFX2:1:21102:11122:19120/151‑1 (MQ=60)
GGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCAATTTTTTTGCGGGGGTCTGCATCAGCGG < NB501016:282:H2V7GAFX2:4:11611:2527:19364/151‑1 (MQ=60)
CCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCAATTTTTTTGCGGGGGTCTGCATCAGCGGTGG < NB501016:282:H2V7GAFX2:1:11304:7833:3812/151‑1 (MQ=60)
GTATGGACCGACTCGGCGCGTTCGTCACCCTCGGAACCGTTTATGTCGTCGGATTAGCAATCGTTGCTCTGTCCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGTCGGCCATTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACT < NB501016:282:H2V7GAFX2:4:11607:4056:11146/151‑1 (MQ=60)
GACTCGGCGGGTACGTCACCCTCGGAAGCGTTTATGTCGTCGGATTCGCATTCGTTGGGCTGACCGGTGTCGCCTTTTGGGCGCGGTTGTGGGTCCTATTGACGGCCATTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACTGAAGAGCCT < NB501016:282:H2V7GAFX2:3:21405:24258:16520/151‑1 (MQ=60)
CCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCAATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCC < NB501016:282:H2V7GAFX2:4:21606:6936:18540/151‑1 (MQ=60)
GTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCATTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACGCCG > NB501016:282:H2V7GAFX2:1:21306:18102:17829/1‑150 (MQ=60)
CGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCATTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATG < NB501016:282:H2V7GAFX2:4:11410:16467:15353/151‑1 (MQ=60)
GTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCATTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTAATCGCGCTGTCCGCGGTGTTCTATCAGACACCGATGC > NB501016:282:H2V7GAFX2:3:11612:9854:9495/1‑151 (MQ=60)
TCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCAATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCG > NB501016:282:H2V7GAFX2:3:11604:24442:3487/1‑151 (MQ=60)
TGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCAATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGG < NB501016:282:H2V7GAFX2:2:21105:8539:8373/150‑1 (MQ=60)
TGCGCGCACCGGTGCCCCCTTAACGGCGCCGTTGGGGGTCCTTTTCA‑GGCCATTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGA < NB501016:282:H2V7GAFX2:1:11109:15435:4814/150‑1 (MQ=60)
GACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCATTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGG < NB501016:282:H2V7GAFX2:2:11110:19321:8897/149‑1 (MQ=60)
GTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCAATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGG < NB501016:282:H2V7GAFX2:3:11605:1186:19287/151‑1 (MQ=60)
GGCGCCGTTGTGGGTCCTATTGACGGCCATTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTC > NB501016:282:H2V7GAFX2:3:21409:14057:9557/1‑151 (MQ=60)
CCGTTGTGGGTCCTATTGACGGCCATTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATACGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCG < NB501016:282:H2V7GAFX2:3:11404:20560:4927/151‑1 (MQ=60)
TGTGGGTCCTATTGACGGCCATTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCAT > NB501016:282:H2V7GAFX2:4:11410:11311:15769/1‑151 (MQ=60)
GACGGCCAATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGAT < NB501016:282:H2V7GAFX2:1:11311:5046:17164/150‑1 (MQ=60)
GCCAATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGG < NB501016:282:H2V7GAFX2:3:11502:14246:15410/151‑1 (MQ=60)
ATTTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCG > NB501016:282:H2V7GAFX2:1:21102:6228:10881/1‑151 (MQ=60)
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CATCGCCGCTGCATTTGTCACCGGGCCCTGTATGGACCGACTCGGCGCGTACGTCACCCTCGGAACCGTTTATGTCGTCGGATTCGCATTCGTTGCGCTGACCGGTGTCGCCTTTACGGCGCCGTTGTGGGTCCTATTGACGGCCAATTTTTTTGCGGGGGTCTGCATCAGCGGTGGACAGAAGAGCCTCATCGCGCTGTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCG > NC_002947_CJ‑RC/4768995‑4769290
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
