Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F14 I0 R1
|
206 |
76.7 |
3255580 |
98.8% |
3216513 |
146.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| JC |
NC_002947_CJ‑RC |
4,715,447 |
(GCCTGGCCCTGA)1→2 |
54.0% |
coding (571/1932 nt) |
PP_4173 → |
two‑component system sensor histidine kinase/response regulator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947_CJ‑RC |
4715436 = | 34 (0.480) | 37 (0.560) |
32/254 |
NT |
54.0% |
coding (560/1932 nt) |
PP_4173 |
two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947_CJ‑RC |
= 4715447 |
31 (0.470) | coding (571/1932 nt) |
PP_4173 |
two‑component system sensor histidine kinase/response regulator |
TCCAGGGCGCTGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947_CJ‑RC/4715589‑4715436
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaggcTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTCAC < NC_002947_CJ‑RC/4715447‑4715304
TCCAGGGCGCTGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGC > 3:363950/1‑149
TCCAGGGCGCTGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGC > 2:285130/1‑149
tcatCGCTGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCA < 4:223250/144‑1
GCGCTGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCT < 3:354306/149‑1
GCTGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCGTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCA < 1:25396/149‑1
ATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGC < 3:3191/149‑1
TGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAG < 2:178710/149‑1
GCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGC < 1:285130/148‑1
GGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAG < 1:153752/149‑1
AGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTG < 4:323906/149‑1
AGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGT > 1:170900/1‑148
TGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTG > 7:95643/1‑147
GCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCG > 2:312234/1‑148
TCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAA < 7:418086/146‑1
TCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAGCAACGC > 1:143042/1‑149
CGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGC > 5:186926/1‑148
GACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGA > 1:295443/1‑149
GGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCC > 3:212193/1‑149
CAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCG > 6:189014/1‑148
GTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGA > 2:171593/1‑149
GCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCT > 2:261484/1‑149
GCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCT > 4:214572/1‑149
GCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTC < 4:363950/147‑1
TTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCT > 2:326185/1‑149
GCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCT < 2:112103/147‑1
GAATCGCCTTGACCGAATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCGAGCAAGAAGGTGAACAGCAGGGAGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCATGCTTGCG > 5:253790/1‑148
TCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGA < 1:171593/149‑1
TGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTG > 6:35185/1‑146
TGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTG > 7:110484/1‑146
GACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGTCTGA < 6:128760/146‑1
GACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAA < 2:340466/147‑1
CATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGA > 6:317993/1‑147
TCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGC < 4:173086/148‑1
TCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGC < 2:103546/148‑1
GGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCAC < 2:170900/149‑1
GGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGC > 1:205132/1‑40
GGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGC < 2:205132/40‑1
CAGGCTCAGGGCCAGGCTCCGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCC > 2:157317/1‑147
CAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCC > 4:105096/1‑147
CAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCC > 2:33977/1‑147
AGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAG < 3:133810/149‑1
GGCTCAGGGCCAGGCTCCGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGG < 1:157317/149‑1
AGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTC < 4:212193/149‑1
GGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTC < 1:278843/147‑1
CAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTCAC < 4:353136/149‑1
CAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTCAC < 1:312234/149‑1
CAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTCA > 7:346570/1‑148
GGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTC > 5:240571/1‑145
GGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTC < 6:240571/145‑1
TCCAGGGCGCTGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947_CJ‑RC/4715589‑4715436
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaggcTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTCAC < NC_002947_CJ‑RC/4715447‑4715304
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
