Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F14 I0 R1 206 76.7 3255580 98.8% 3216513 146.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_002947_CJ‑RC 4,875,480 Δ756 bp 100% coding (1‑756/756 nt) PP_4283 ← GntR family transcriptional regulator

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947_CJ‑RC 4875480 4876235 756 76 [0] [0] 78 PP_4283 GntR family transcriptional regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947_CJ‑RC = 48754790 (0.000)65 (0.930) 52/270 NT 100% intergenic (‑157/+1) aqpZ/PP_4283 aquaporin Z/GntR family transcriptional regulator
?NC_002947_CJ‑RC 4876236 = 0 (0.000)intergenic (‑1/‑280) PP_4283/PP_4284 GntR family transcriptional regulator/transporter

GATK/CNVnator alignment

N/A