Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F13 I0 R1
|
213 |
60.4 |
2554362 |
98.6% |
2518600 |
147.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
NC_002947_CJ‑RC |
4,875,480 |
Δ756 bp |
100% |
coding (1‑756/756 nt) |
PP_4283 ← |
GntR family transcriptional regulator |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_002947_CJ‑RC |
4875480 |
4876235 |
756 |
68 [0] |
[0] 71 |
PP_4283 |
GntR family transcriptional regulator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947_CJ‑RC |
= 4875479 | 0 (0.000) | 66 (1.190) |
49/272 |
NT |
100% |
intergenic (‑157/+1) |
aqpZ/PP_4283 |
aquaporin Z/GntR family transcriptional regulator |
| ? | NC_002947_CJ‑RC |
4876236 = |
0 (0.000) | intergenic (‑1/‑280) |
PP_4283/PP_4284 |
GntR family transcriptional regulator/transporter |
GATK/CNVnator alignment
N/A
