Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F13 I0 R1 203 85.6 3649704 98.8% 3605907 146.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947_CJ‑RC 2,101,751 A→C 16.9% L186R (CTG→CGG)  PP_1878 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947_CJ‑RC2,101,7510AC16.9% 97.9 / 3.7 73L186R (CTG→CGG) PP_1878hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (33/23);  new base C (7/6);  total (40/33)
Fisher's exact test for biased strand distribution p-value = 7.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGCCCTCATGGGCAGCGC  >  NC_002947_CJ‑RC/2101604‑2101898
                                                                                                                                                    |                                                                                                                                                   
tCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGCAGGCCAg                                                                                                                                                    >  3:14696/1‑149 (MQ=255)
       gCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGcc                                                                                                                                             >  2:135106/1‑149 (MQ=255)
       gCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATAATGCACGCCGCGCTCGAAGGCCACGCGCGcc                                                                                                                                             >  7:311301/1‑149 (MQ=255)
           gTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTg                                                                                                                                           <  6:203538/147‑1 (MQ=255)
            tcttctGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCAAACACCTTCGGCTCCGGCTGCTTGCGCAAATACCGCACGCCGCGCTCGAAGGGCCGGCGCGCCTGccc                                                                                                                                        >  3:403635/1‑149 (MQ=255)
             cttctGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGAGCAAATACAGCACGCCGCCCTCGAAGGCCAGGCGCGCCTGGccc                                                                                                                                       >  1:252789/1‑148 (MQ=255)
                ctGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCggg                                                                                                                                     <  8:348448/148‑1 (MQ=255)
                   ccGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCGGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTCCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTg                                                                                                                                  <  2:165111/148‑1 (MQ=255)
                           aTGCGGTCCAGTACCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCCGGCGCGCCTGGCCGGGCTGGCCTTTTTg                                                                                                                         >  6:201774/1‑149 (MQ=255)
                                gTCCAGTACCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCCCCGGGCCCGGCGCGCCGTTTTGCAggg                                                                                                                    >  7:345752/1‑149 (MQ=255)
                                 tacAGTACCTGGGCATTGGCCCGGGCC‑AACAGTATCTCAAGATACGTCAGCAGCTCTTCATACACAATCCGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTGGAAGTCCATGCGCGCCTGGCCGGGCGGGCCGTTTTTCAgcgg                                                                                                                   >  4:121603/3‑146 (MQ=255)
                                   cAGTACCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCCGGCGCGCCAGGCCGGGCTGGCCTTTTTTCAGGGCCt                                                                                                                 >  5:412129/1‑149 (MQ=255)
                                    aGTACCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGGGGGCCGTTTTGGAGGGccgg                                                                                                                >  1:94170/1‑147 (MQ=255)
                                       aCCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCCGGCGCGCCGGGCCGGGCGGGCCGTTTTGGAGGGCCTGTTg                                                                                                             >  7:404402/1‑149 (MQ=255)
                                        ccTGGGCTTTGGCCCGGGCC‑AACAGTTTCTCAAGATCCTGCAGCTGCTCTTCATACACCTTCGGCGCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGACGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTgg                                                                                                            <  8:311301/149‑1 (MQ=255)
                                         cTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCGGGCCGGGGGGGGCGTTTTTGAGGGCCGGTTggg                                                                                                           >  1:204086/1‑148 (MQ=255)
                                            ggCTTTGCCCCGGGCA‑AACAGTTTCTCATGATACGTCTGCTGCTCTACAACCACCTTCGGCCCCGGGTGCTTGCCAAAATACTGCACGCCGCGCTCGAAGGCCTGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGa                                                                                                        <  4:85676/149‑1 (MQ=255)
                                             gatttGGCCGGGGCA‑AACTTTTTCTAAAGATCCGTCAGCTGCTCTTCATACACCTTCGGCTCGGGGTGCTTGCGAAAATACTGCACGCCGCGCTCGACGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGa                                                                                                        <  2:345728/145‑1 (MQ=255)
                                             gCATTGGCCCGGGCC‑AACAGTTTCTCAATATACGTCAGCTGCTATTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAg                                                                                                       <  8:110493/149‑1 (MQ=255)
                                              tgttGGCCCGGGCC‑AACAGTTTCTCGAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCGGTTTTGCCGGGCCTGTTGGGCGAgg                                                                                                      >  2:274274/3‑149 (MQ=255)
                                               aTTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGGTGGCCTTTTTGCAGGGCCTGTTGGCCGAGgt                                                                                                     >  1:248076/1‑149 (MQ=255)
                                                   ggccGGGCCAAACTGTTTCTAAATAAACGTCCGCTGCTTTTCATACACTTTCGGCTCGGGGTGCTTGCCAAAATACTCCCCGCCGCGCTCCATGGCCCGGCGCGCCGGCCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGgttg                                                                                                   <  4:231825/146‑1 (MQ=255)
                                                   gCCCGGGCC‑AACTGTTTCTCAAGATAGGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAATTACTGCACGCCGCGGTCGATGGCCTGGCGGGCGTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGgttgtt                                                                                                 <  8:235213/149‑1 (MQ=255)
                                                      ggggCA‑AACAGTTTCTCAAGATAGTTCAGCTGCTCTTCATACACCTTCGGCTCGGGCTGCTTGCGCAAATACTGCAGGCCGCGGTCGAAGGCCAGGGGGGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTgaa                                                                                              <  6:412732/148‑1 (MQ=255)
                                                      cGGGCC‑AACTGTTTCTCAAGATACGGCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGAAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTgaa                                                                                              <  2:126354/149‑1 (MQ=255)
                                                       gggCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTAATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTgaag                                                                                             <  8:256046/149‑1 (MQ=255)
                                                           c‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAAct                                                                                         >  7:229088/1‑149 (MQ=255)
                                                             aaCAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCCGGCGCGCCGGGCCGGGGGGGCCTTTTTGCAGGGGCGGTTGGCCGAGGTTGTTGAAGAAatc                                                                                        >  5:54093/1‑149 (MQ=255)
                                                                     ctcAATATACGTCCGCGGCGCTTCATACCCGTGCGGCCCGGGCGGCTGGCCCAAATACTCCCCGCCGCGCCCCACGCCCAGGCGCGCGGGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATgc                                                                                 <  4:14696/148‑1 (MQ=255)
                                                                      tcAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCCGGCGCGCCAGTCCCGGCTGGCCTTTTTTAAGGGCCGGTTGGGCGAGGTTGTTTAAGAACTATATATtca                                                                                >  2:397989/1‑148 (MQ=255)
                                                                        aataTACGTCAGCTGCTATTAATACACCTTCGGCTCCGGCTGCTTGCGAAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATgcag                                                                               <  2:8677/144‑1 (MQ=255)
                                                                        aaGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATgcag                                                                               <  6:234599/147‑1 (MQ=255)
                                                                        aaGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCAGGCCGGGCTGGCCATTTTGAAGGGCCTGTTGGCCGAGGTTGTTGAAGAACACGATATtcag                                                                               >  4:300173/1‑147 (MQ=255)
                                                                             aCGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCCCCCGCCCCAGGCCGGGCTGGCCCTTTTTCAGGGCCTGGTGGGCGAGGGTGTTGAAGAACTCAATATTAAGCAGCAc                                                                         >  1:287836/1‑148 (MQ=255)
                                                                                 cAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCGGGCCGTTTTTCAGGGCCTGTTGGCCGCGGTTGTTGAAGAACTCTATATGCAGCAGCACCAgca                                                                    >  3:57436/1‑147 (MQ=255)
                                                                                  aGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCACGCGCGCCAGGCCGGGCGGGCCATTTTGCAGGGCCAGTTGGCCGAGGTTGTTGAAGAACACAATAAGCAGCAGCACCACGa                                                                    >  6:149892/1‑148 (MQ=255)
                                                                                    ctgctCTTCATACACCTTCGGCTCCGGCTGCAAGCGAAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCAGGGCGGGCTGGGCTTTTTGGAGGGGGAGTTGTCGGAGGTTGGTGAAGAAATCTATATGCAGCAGCACCACCatat                                                                 >  2:174220/1‑149 (MQ=255)
                                                                                      gctCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATgg                                                               >  3:216823/1‑149 (MQ=255)
                                                                                       ctattCAAACCCCTTCGGCCCCGGCTGCTGCCCCAAATCCTCCACGCCGCGCTCGACGGCCAGGCGCGCCGGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGc                                                              <  5:373132/146‑1 (MQ=255)
                                                                                         ctTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCg                                                             >  6:376744/1‑148 (MQ=255)
                                                                                         ctTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCGTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCg                                                             >  1:105914/1‑148 (MQ=255)
                                                                                            cATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGa                                                           <  7:286689/147‑1 (MQ=255)
                                                                                            aaTACACGTTGGGCTCGGGCTGCTTGCCCAAATACTCCCCGCCGCGCTCGACGGCCCGGGGCGGCGGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGAt                                                          <  1:407451/147‑1 (MQ=255)
                                                                                             aTACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCAGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATTGCGGAtt                                                         >  2:420838/1‑148 (MQ=255)
                                                                                               ccacCTTCGGCTCGGGCTGCTTGCGAAAATCCTGCCCGCCGCGCTCGACGGCCCGGCGCGCCGGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTcc                                                      <  3:142391/148‑1 (MQ=255)
                                                                                                cacCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTcc                                                      <  8:438215/148‑1 (MQ=255)
                                                                                                   cTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGa                                                  <  6:137581/149‑1 (MQ=255)
                                                                                                   cTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGa                                                  >  8:37145/1‑149 (MQ=255)
                                                                                                      cGGCTCCGTCTGCTTGCGAAAATACTGCACGCGGCGCTCGACGGCCATGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGTTATGTCGGATTTCCTTGAc                                                 <  2:252789/147‑1 (MQ=255)
                                                                                                        gCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGGCGTTTTGCAGGGCCGGTTGGCCGAGGGTGTTGAAGAACACGATATGCAGCAGCACCAGGATATGGGGGATTTACTTGACCCa                                              >  5:64652/1‑148 (MQ=255)
                                                                                                          tCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGGTGTTGAAGAAATCTATATGCAGCAGCCCCAGGATATGGCGGATTTCCTTGACCCaaag                                           >  8:408080/1‑147 (MQ=255)
                                                                                                                  ctTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCt                                   >  7:18398/1‑149 (MQ=255)
                                                                                                                   ttGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCAGGCCGGGCTGGCCTTTTTTCAGGGCCTGTTGGCCGAGGTTGTTTAAGAACTCTATATGCAGCAGCACCAGGATATTGCGGATTTACTTTAcc                                                >  4:308326/1‑135 (MQ=255)
                                                                                                                     gcgcAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTGCTTGACCCAATGCTTGGCCTCGa                                >  7:441905/1‑149 (MQ=255)
                                                                                                                     gcgcAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGa                                >  1:271842/1‑149 (MQ=255)
                                                                                                                       gcAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGa                                >  7:155433/1‑147 (MQ=255)
                                                                                                                        caaaaccTGCCCGCCGCGGTCGACGGCCCGGCGCGCCGGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAg                             <  5:149892/143‑1 (MQ=255)
                                                                                                                          aaTACTGCACGCCGCGCTCGATGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCg                           <  2:411713/149‑1 (MQ=255)
                                                                                                                          aaTACTGCACGCCGCGCTCGACGGCCCGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCg                           <  7:161433/149‑1 (MQ=255)
                                                                                                                           aTACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCgg                          <  5:230618/149‑1 (MQ=255)
                                                                                                                              cggCAGGCCGCGCTGTACGGCCCGGCGCGGCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCa                       <  4:403635/147‑1 (MQ=255)
                                                                                                                               tGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCaa                      >  2:368159/1‑149 (MQ=255)
                                                                                                                                   cgccgcGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCaagaag                  <  8:345752/149‑1 (MQ=255)
                                                                                                                                     gcgggcTCGAAGGCCTGGCGGGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGcc                <  2:248076/145‑1 (MQ=255)
                                                                                                                                     ccgcGCTCGAAGGCCTGGCGCGCCGGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGcc                <  4:56742/149‑1 (MQ=255)
                                                                                                                                      cgcgCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGccc               <  2:271842/149‑1 (MQ=255)
                                                                                                                                          cagcccggCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGCCCTCAt           >  7:242297/7‑149 (MQ=255)
                                                                                                                                          cTCGACGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGCCCTCAt           <  1:135106/149‑1 (MQ=255)
                                                                                                                                           tCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGCCCTCATg          >  7:117124/1‑149 (MQ=255)
                                                                                                                                             gAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGCCCTCATggg        >  4:221788/1‑149 (MQ=255)
                                                                                                                                             gAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGCCCTCATggg        >  2:272637/1‑149 (MQ=255)
                                                                                                                                             gAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGCCCTCATggg        >  8:87468/1‑149 (MQ=255)
                                                                                                                                                   cAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGCCCTCATGGGCAgcgc  <  8:242297/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
TCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCC‑AACAGTTTCTCAAGATACGTCAGCTGCTCTTCATACACCTTCGGCTCCGGCTGCTTGCGCAAATACTGCACGCCGCGCTCGAAGGCCAGGCGCGCCTGGCCGGGCTGGCCTTTTTGCAGGGCCTGTTGGCCGAGGTTGTTGAAGAACTCTATATGCAGCAGCACCAGGATATGGCGGATTTCCTTGACCCAATGCTTGGCCTCGACAGCGGGCAAGAAGCCCTCATGGGCAGCGC  >  NC_002947_CJ‑RC/2101604‑2101898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A