Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F13 I0 R1
|
203 |
85.6 |
3649704 |
98.8% |
3605907 |
146.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| JC |
NC_002947_CJ‑RC |
5,558,423 |
+GCC |
89.7% |
intergenic (‑84/+87) |
PP_4887 ← / ← PP_4888 |
hypothetical protein/methyl‑accepting chemotaxis transducer |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947_CJ‑RC |
= 5558423 | 2 (0.030) | 17 (0.220)
+GCC |
16/264 |
NT |
89.7% |
intergenic (‑84/+87) |
PP_4887/PP_4888 |
hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947_CJ‑RC |
5558424 = |
2 (0.030) | intergenic (‑85/+86) |
PP_4887/PP_4888 |
hypothetical protein/methyl‑accepting chemotaxis transducer |
TCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/5558281‑5558423
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGC > NC_002947_CJ‑RC/5558424‑5558571
|||
TCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCC < 4:146029/147‑1
AGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAA‑TTTCC > 5:139751/1‑149
AGGTCGGCCGGGGCAGCGATTAGGCGGGCGGACATCAGAAACTCCTTTTGTCATGTGTCCCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCTAAAGGGCCGCATAGCGGCCCCGGCAA‑TTTCCGCGTGTAT < 8:387414/148‑1
gCGGCCTGGGCAGCGATTAGTCGGGCGCAAATGAGCAACTCCTTTTGTCATGTGTCGCCGACATCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGGCGCTAATGGGCCGAATAGCGGCCCCGGCAA‑TTTCCGCGTGTATGCAA < 5:99389/148‑1
GGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTG < 8:121131/149‑1
cagcttTTAGTCGGGCGGACATGAGAAACTCTTTTTGTCTTGTGGCGCCGACAGCATAGCAACACCGCTCAGGTGTGGTAGCGGCCTTTTGTCGCTAATGGGCCGAATTGCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGG < 6:139751/143‑1
gtATTAGTGGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGAGAGAATTGCAACACCGCTCAGGTGTGGGAGGGGCCTTGTGTCGCTAAAGGGCGGCATAGCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGC < 4:354826/146‑1
TTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGAATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCTAAAGGGCCGAATAGCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCT < 8:89960/149‑1
GGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAG < 6:409587/149‑1
GGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGC < 8:339491/149‑1
GGCGCACATGAGCAATTCCTTTTGTCTTGTGTCGCCGACAGCTTAGCATCACCGCTCAGGTGTGGGAGGGGCGTTGTGCCGCGAAAGGGCGGCAAAGCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGC < 6:209302/149‑1
GCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCATTGTGTCGCTAACGGGCCGCATAGCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGAC < 2:381344/149‑1
atcTGTCGCCGACAGCATAGCAACACCCCCCAGGTGTGGGAGCGGCCTTGTCCCGCGAAAGGGCCGCATAGCCGCCCAGGCAA‑TTACCGCGTGTATTCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAG < 2:344091/146‑1
TGTCGCTAACGGGCCGCATAGCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGA < 6:378134/149‑1
TCGCGAAAGGGCCGCATAGCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGC > 8:436752/1‑149
CGAAAGGGCCGCATAGCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGC > 5:433861/1‑149
GGCCGCATAGCGGCCCCGGCAA‑TTTCAGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCACTTTCGCGACACAAGGACCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGACCAGGCTGGCGCGCAGCTGAGCCGCCAGAT > 8:229349/1‑148
ccaatcGCGCCCCCGGCAA‑TTTCCGCGTGTATCCAACAACCCTGGGGCTGCTATGCAGCCCTTTCGCTACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATC < 1:260516/143‑1
ccaaccGCGCCCCCGCCAT‑TTCCCGCGTTTATCCAAAAACCCTGGGGCTGCTATCCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATC < 3:350537/143‑1
gtaatcgGGCCCCGGGAATTTTCCGCGTGTATGCAAAAAACCTGGGGCTGCTATGATGCCCTTTCGCGAAACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATC < 8:410451/142‑1
GCATAGCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATC > 1:156091/1‑148
aagGCGCCCCCGGAAA‑TTTCCGCGTGTATGCAACAACCCTGGGGCTGCTATGCAGCCCTTTGGCTACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCC < 7:456123/144‑1
GCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCA < 1:145150/148‑1
GCGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCA > 2:145150/1‑148
CGGCCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCAC > 1:394439/1‑148
CCCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTG > 1:386330/1‑149
CCCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGC < 2:386330/149‑1
|||
TCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/5558281‑5558423
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGCAA‑TTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGC > NC_002947_CJ‑RC/5558424‑5558571
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
