Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F13 I0 R1
|
203 |
85.6 |
3649704 |
98.8% |
3605907 |
146.1 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGT > NC_002947_CJ‑RC/1419400‑1419658
|
CCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CC < NB501016:282:H2V7GAFX2:4:11402:6228:17500/151‑1 (MQ=60)
GGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Ccacgtagcgggggcgcc > NB501016:282:H2V7GAFX2:4:21606:16603:19538/1‑134 (MQ=60)
GATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Ccacatatcgcgggcccccccccc > NB501016:282:H2V7GAFX2:4:11612:3883:5376/1‑128 (MQ=60)
CGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGAGCTGG‑C > NB501016:282:H2V7GAFX2:3:21604:10272:5920/1‑124 (MQ=60)
GGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Ccgaattgccgggggccccccccccccac > NB501016:282:H2V7GAFX2:4:21401:15570:2721/1‑123 (MQ=60)
GAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG > NB501016:282:H2V7GAFX2:2:11107:4824:17616/1‑151 (MQ=60)
AGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CC < NB501016:282:H2V7GAFX2:1:21109:15906:1900/119‑1 (MQ=60)
TGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGC < NB501016:282:H2V7GAFX2:1:11206:15252:17940/145‑1 (MQ=60)
GTTGTTTTCGCCTTTGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCG < NB501016:282:H2V7GAFX2:3:21506:25952:15169/150‑1 (MQ=60)
TTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cctcattggggggggccccccccccccccccggggtgggggggggggggg > NB501016:282:H2V7GAFX2:4:11410:12601:8117/1‑102 (MQ=60)
CCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCG < NB501016:282:H2V7GAFX2:3:21504:2270:17222/106‑1 (MQ=60)
TGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGT < NB501016:282:H2V7GAFX2:2:11307:25129:1510/150‑1 (MQ=60)
GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGG < NB501016:282:H2V7GAFX2:1:21308:7746:3588/150‑1 (MQ=60)
GGCGACTGTGGTGGGTTCTGTTGTGGTGTCTGTGGGCAGTGGTTTGTATCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGG < NB501016:282:H2V7GAFX2:1:11106:16153:20242/150‑1 (MQ=60)
GCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGG < NB501016:282:H2V7GAFX2:3:11608:9241:10452/150‑1 (MQ=60)
CCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Ccgagtaggcgggggacgcccccccaaccaagaaatgagaattactggtctgcagtggtgaggcgagcgttagtgg > NB501016:282:H2V7GAFX2:4:21406:12571:2941/1‑76 (MQ=60)
CCGACTGTGGGGGGTTCTGTTGGGTTGGCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCG < NB501016:282:H2V7GAFX2:2:21307:25651:19349/151‑1 (MQ=60)
CGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Ccccaattgcgggggcccccccccccccccccaaaagggtgtggggggggggggggggggggggggtgggggggggg > NB501016:282:H2V7GAFX2:4:21608:8257:13779/1‑75 (MQ=60)
CTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Cccccaaaaccaggcgcccccccccccccaccacaaaatataagaagagaacctgagtttggaaagaaagagaagcgggcgacccccccaa > NB501016:282:H2V7GAFX2:1:21302:19863:18703/1‑60 (MQ=60)
TGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Ccgcgttgtgggggggggggcccccccccccccccgggggggggggggggggggggggggggggggggtggggggggggggggggcccggcgg > NB501016:282:H2V7GAFX2:2:11206:5010:18804/1‑59 (MQ=60)
GTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Ccacataacccggcgcccccccaaccaacacaaaattgtggggggggggcgcgggggggggcactgggggggcggggggggccccaaaaacgcgcgc > NB501016:282:H2V7GAFX2:3:21610:6727:4575/1‑55 (MQ=60)
GGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGG < NB501016:282:H2V7GAFX2:1:21110:10020:3423/110‑1 (MQ=60)
GCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑Ccacatagagcggggggcccccccccccccggcgaggggggggggggggggggggggggtgggggggggggggggggggggggggcggcgggagggagagggaaaagtat > NB501016:282:H2V7GAFX2:3:21609:11554:17381/1‑42 (MQ=60)
CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCG > NB501016:282:H2V7GAFX2:2:11210:23839:16361/1‑71 (MQ=60)
|
CCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGT > NC_002947_CJ‑RC/1419400‑1419658
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
