Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F64 I1 R1 60 70.4 2989830 98.5% 2944982 146.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947_CJ‑RC 5,398,628 Δ8,705 bp [hsdM]–[PP_4748] [hsdM], hsdS, PP_5711, PP_4743, PP_4745, PP_4746, [PP_4748]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947_CJ‑RC 5398628 5407332 8705 104 [0] [0] 102 [hsdM]–[PP_4748] [hsdM],hsdS,PP_5711,PP_4743,PP_4745,PP_4746,[PP_4748]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947_CJ‑RC = 53986270 (0.000)99 (1.440) 74/290 0.0 100% coding (38/1218 nt) hsdM type I restriction modification system methylase
?NC_002947_CJ‑RC 5407333 = 0 (0.000)coding (702/801 nt) PP_4748 amino acid ABC transporter substrate‑binding protein

GATK/CNVnator alignment

N/A