Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F14 I1 R1 57 86.1 3667460 98.7% 3619783 146.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947_CJ‑RC 4,767,982 A→T intergenic (+89/‑93) fpvA → / → tpaK TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947_CJ‑RC4,767,9820AT100.0% 308.3 / NA 92intergenic (+89/‑93)fpvA/tpaKTonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (46/46);  total (46/46)

GTGTATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTAATTACAATTAATCATCGGCTCGTTTAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTCTTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGC  >  NC_002947_CJ‑RC/4767843‑4768126
                                                                                                                                           |                                                                                                                                                
gtgtATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAAtt                                                                                                                                          >  5:118536/1‑148 (MQ=255)
 tgtATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTaa                                                                                                                                        <  3:434960/149‑1 (MQ=255)
 tgtATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTCAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTaa                                                                                                                                        >  5:8847/1‑149 (MQ=255)
  gtATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTaa                                                                                                                                        >  2:130055/1‑148 (MQ=255)
   tATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAat                                                                                                                                       <  2:56849/148‑1 (MQ=255)
   tATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAat                                                                                                                                       >  6:286658/1‑148 (MQ=255)
     tGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAatcat                                                                                                                                    <  5:165322/149‑1 (MQ=255)
      ggTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACTCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTAACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAatcat                                                                                                                                    >  7:466827/1‑148 (MQ=255)
       gTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCg                                                                                                                                  <  1:343865/149‑1 (MQ=255)
           cccACGCAACTTCACCATCACCGCCAAGTACAGGTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGc                                                                                                                                <  7:301418/147‑1 (MQ=255)
            ccACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCg                                                                                                                             >  3:171421/1‑149 (MQ=255)
                  aaCTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAAt                                                                                                                       <  3:73425/149‑1 (MQ=255)
                      tCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCGGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGa                                                                                                                   >  4:308072/1‑149 (MQ=255)
                      tCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGa                                                                                                                   >  5:23833/1‑149 (MQ=255)
                      tCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGa                                                                                                                   >  5:17494/1‑149 (MQ=255)
                       cACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGa                                                                                                                   <  6:402705/148‑1 (MQ=255)
                        aCCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCGGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGAt                                                                                                                  <  3:308072/148‑1 (MQ=255)
                         ccATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGa                                                                                                                   >  8:101299/1‑146 (MQ=255)
                          cATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGa                                                                                                                   >  8:410171/1‑145 (MQ=255)
                          cATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGAt                                                                                                                  >  4:257760/1‑146 (MQ=255)
                           aTCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAg                                                                                                               >  8:214222/1‑148 (MQ=255)
                           aTCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGa                                                                                                              >  6:8997/1‑149 (MQ=255)
                                      gTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATtgt                                                                                                   <  1:14203/149‑1 (MQ=255)
                                      gTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATtgt                                                                                                   <  3:261675/149‑1 (MQ=255)
                                       tACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAatca                                                                                                                                     <  5:49316/114‑1 (MQ=255)
                                       tACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAatca                                                                                                                                     >  6:49316/1‑114 (MQ=255)
                                       tACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATtgt                                                                                                   <  7:214222/148‑1 (MQ=255)
                                       tACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATtgt                                                                                                   <  7:152529/148‑1 (MQ=255)
                                         cAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTTTCTATGGAGGTCATGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGa                                                                                                 <  3:392916/148‑1 (MQ=21)
                                         cAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGa                                                                                                 >  8:170750/1‑148 (MQ=255)
                                         cAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGAGCGGTTTTTTGAATTAACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTTATCATCGGCTAGTATAATGTGATCAGACATGGAAATGTGAg                                                                                                >  1:212875/1‑149 (MQ=21)
                                          aGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCCGAAATTTGAATTCACTAGTAGTCACTAAGGAGGACACGTATCAAAACAATTGACAATAAATAAACGGCTACTAAAATGAGATCAGACCTCCAATTGTGAGc                                                                                               >  2:409909/1‑149 (MQ=255)
                                           gCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGc                                                                                               >  7:224546/1‑148 (MQ=255)
                                            cTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCg                                                                                              >  1:201533/1‑148 (MQ=255)
                                               cTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGa                                                                                            <  3:53389/147‑1 (MQ=255)
                                                tGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATaa                                                                                         <  3:435980/149‑1 (MQ=255)
                                                  aTCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATaa                                                                                         <  4:318760/147‑1 (MQ=255)
                                                      ccTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAAtta                                                                                   >  5:156306/1‑148 (MQ=255)
                                                           cGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAattatt                                                                                 >  6:349136/1‑146 (MQ=255)
                                                           cGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAg                                                                              <  5:319221/149‑1 (MQ=255)
                                                            gTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTTTTGACAATTAATCATCGGCTCGTATAATGTGATCAGCCCTGGAATTGTGAGCGGATAACAattatt                                                                                 >  3:266907/1‑145 (MQ=18)
                                                            gTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAAttat                                                                                  >  8:452962/1‑142 (MQ=255)
                                                              tGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGAt                                                                            >  5:447558/1‑148 (MQ=255)
                                                                 aCGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTaa                                                                         <  5:8997/148‑1 (MQ=255)
                                                                   tcAAAAAACCGCACCTGGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATaa                                                                                                                        >  2:290967/2‑99 (MQ=17)
                                                                   gCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACTATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACt                                                                       >  1:414237/1‑148 (MQ=17)
                                                                   gCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACt                                                                       >  2:414997/1‑148 (MQ=255)
                                                                     aaaaaaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGc                                                                                               >  6:304610/1‑122 (MQ=255)
                                                                     aaaaaaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGc                                                                                               <  5:304610/122‑1 (MQ=255)
                                                                     aaaaaaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTca                                                                     >  6:301752/1‑148 (MQ=255)
                                                                      aaaaaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTcaca                                                                   <  2:10289/149‑1 (MQ=255)
                                                                      aaaaaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTcaca                                                                   <  2:383595/149‑1 (MQ=255)
                                                                        aaaCCGCACCTGGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTcac                                                                    >  8:376859/1‑146 (MQ=14)
                                                                        aaaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTcacaca                                                                 >  4:53130/1‑149 (MQ=255)
                                                                         aaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAg                                                                <  3:161919/149‑1 (MQ=255)
                                                                         aaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAg                                                                >  2:206502/1‑149 (MQ=255)
                                                                         aaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAg                                                                <  4:42170/149‑1 (MQ=255)
                                                                            cGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGATCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGga                                                              <  7:322984/148‑1 (MQ=14)
                                                                             gCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGgaga                                                            <  6:118536/149‑1 (MQ=255)
                                                                                cccAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGatat                                                         <  4:239748/149‑1 (MQ=255)
                                                                                cccAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGatat                                                         <  6:17494/149‑1 (MQ=255)
                                                                                cccAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGatat                                                         <  6:23833/149‑1 (MQ=255)
                                                                                 ccAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATc                                                        <  6:145206/149‑1 (MQ=255)
                                                                                     gTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCatat                                                    >  5:237523/1‑149 (MQ=255)
                                                                                     gTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCatat                                                    <  1:130055/149‑1 (MQ=255)
                                                                                      tGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCATATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCatat                                                    >  7:48761/1‑148 (MQ=11)
                                                                                       gCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGt                                                  >  4:274741/1‑149 (MQ=255)
                                                                                            tttttGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCtt                                              <  7:426652/148‑1 (MQ=255)
                                                                                             ttttGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAg                                            >  3:380514/1‑149 (MQ=255)
                                                                                              tttGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTTCTATTGTCAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGTATTGTGAGCGGATAACAATTATTAAGATTATCTCACACAGGAGATATCATATGTCCTTAg                                            <  4:159692/148‑1 (MQ=11)
                                                                                                tGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGc                                           <  8:224546/147‑1 (MQ=255)
                                                                                                tGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCa                                          <  1:206502/148‑1 (MQ=255)
                                                                                                tGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCa                                          <  2:201533/148‑1 (MQ=255)
                                                                                                         tagtagTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATcgcgcg                                >  3:330136/1‑149 (MQ=255)
                                                                                                         tagtagTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATcgcgcg                                >  1:164621/1‑149 (MQ=255)
                                                                                                         tagtagTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATcgcgc                                 >  8:383246/1‑148 (MQ=255)
                                                                                                         tagtagTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATcgcgc                                 <  7:452962/148‑1 (MQ=255)
                                                                                                            tagtCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGa                             <  6:237523/149‑1 (MQ=255)
                                                                                                               tctcTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGaca                           >  8:371123/1‑148 (MQ=255)
                                                                                                                 tctATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTg                        >  4:130412/1‑149 (MQ=255)
                                                                                                                   tATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGc                       >  7:200786/1‑148 (MQ=255)
                                                                                                                    aTGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCg                     >  1:384006/1‑149 (MQ=255)
                                                                                                                         ggTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGAttt                <  1:71666/149‑1 (MQ=255)
                                                                                                                           tCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCa              <  4:330136/149‑1 (MQ=255)
                                                                                                                             aGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCAt             <  1:398889/148‑1 (MQ=255)
                                                                                                                             aGGTATGATTACAATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATc            >  6:386193/1‑149 (MQ=17)
                                                                                                                              ggTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCAt             <  7:376859/147‑1 (MQ=255)
                                                                                                                                   gATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTc       <  8:432730/148‑1 (MQ=255)
                                                                                                                                     ttACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTcgcg    <  3:364536/149‑1 (MQ=255)
                                                                                                                                     ttACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTcgcg    <  3:53130/149‑1 (MQ=255)
                                                                                                                                     ttACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTcgcg    <  3:274741/149‑1 (MQ=255)
                                                                                                                                       aCTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGc  >  2:259402/1‑149 (MQ=255)
                                                                                                                                           |                                                                                                                                                
GTGTATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTAATTACAATTAATCATCGGCTCGTTTAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTCTTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGC  >  NC_002947_CJ‑RC/4767843‑4768126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGTGTATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTAATTACAATTAATCATCGGCTCGTTTAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTCTTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTG  >  NC_002947_CJ‑RC/4767842‑4768131
                                                                                                                                            |                                                                                                                                                      
CGTGTATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTA                                                                                                                                              >  NB501016:282:H2V7GAFX2:3:11507:25511:9562/1‑150 (MQ=60)
 GTGTATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAAT                                                                                                                                            <  NB501016:282:H2V7GAFX2:2:21312:12455:2334/151‑1 (MQ=60)
 GTGTATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTCAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAAT                                                                                                                                            >  NB501016:282:H2V7GAFX2:3:11402:18622:8249/1‑151 (MQ=60)
     ATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATC                                                                                                                                        <  NB501016:282:H2V7GAFX2:3:11602:21042:10378/151‑1 (MQ=60)
      TGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACTCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTAACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCG                                                                                                                                       >  NB501016:282:H2V7GAFX2:4:21612:26807:12352/1‑151 (MQ=60)
       GGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGG                                                                                                                                      <  NB501016:282:H2V7GAFX2:1:21205:11834:11414/151‑1 (MQ=60)
          GACCCACGCAACTTCACCATCACCGCCAAGTACAGGTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCT                                                                                                                                    <  NB501016:282:H2V7GAFX2:4:21410:1279:16575/150‑1 (MQ=60)
            CCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGT                                                                                                                                 >  NB501016:282:H2V7GAFX2:2:11304:4304:2629/1‑151 (MQ=60)
                 acgacatctatcgctgtgactggagttcagacgtgttgctcttccgatctttCAAAAAACCGCACCTGGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAAT                                                                                                                            <  NB501016:282:H2V7GAFX2:1:21109:1078:5635/99‑1 (MQ=21)
                  AAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATG                                                                                                                           <  NB501016:282:H2V7GAFX2:2:11112:4466:16974/151‑1 (MQ=60)
                      TTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGAT                                                                                                                       >  NB501016:282:H2V7GAFX2:3:11404:1164:15248/1‑151 (MQ=60)
                      TTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGAT                                                                                                                       >  NB501016:282:H2V7GAFX2:3:11403:26584:15243/1‑151 (MQ=60)
                        CACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCGGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATC                                                                                                                      <  NB501016:282:H2V7GAFX2:2:21202:10519:14912/150‑1 (MQ=60)
                                      AGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTG                                                                                                       <  NB501016:282:H2V7GAFX2:1:11103:24247:1137/151‑1 (MQ=60)
                                      AGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTG                                                                                                       <  NB501016:282:H2V7GAFX2:4:11609:18255:13513/151‑1 (MQ=60)
                                      AGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTG                                                                                                       <  NB501016:282:H2V7GAFX2:4:11511:9983:16667/151‑1 (MQ=60)
                                      AGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTG                                                                                                       <  NB501016:282:H2V7GAFX2:2:21106:11921:2567/151‑1 (MQ=60)
                                       GTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCAT                                                                                                                                         <  NB501016:282:H2V7GAFX2:3:11408:24796:15670/116‑1 (MQ=60)
                                         ACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCTGTTTTTTGAATTCACTAGTAGTTTCTATGGAGGTCATGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAG                                                                                                     <  NB501016:282:H2V7GAFX2:2:21305:12476:14656/150‑1 (MQ=60)
                                         ACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGAGCGGTTTTTTGAATTAACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTTATCATCGGCTAGTATAATGTGATCAGACATGGAAATGTGAGC                                                                                                    >  NB501016:282:H2V7GAFX2:1:11309:14322:4521/1‑151 (MQ=60)
                                           AGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGG                                                                                                  >  NB501016:282:H2V7GAFX2:4:11611:6315:6086/1‑151 (MQ=60)
                                            GCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGG                                                                                                  >  NB501016:282:H2V7GAFX2:1:11307:19780:8247/1‑150 (MQ=60)
                                               TCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGAT                                                                                                <  NB501016:282:H2V7GAFX2:2:11109:17467:13399/149‑1 (MQ=60)
                                                ATGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAAC                                                                                             <  NB501016:282:H2V7GAFX2:2:21312:3082:5180/151‑1 (MQ=60)
                                                      GCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTAT                                                                                       >  NB501016:282:H2V7GAFX2:3:11601:23387:4149/1‑151 (MQ=60)
                                                           ACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGA                                                                                  <  NB501016:282:H2V7GAFX2:3:21502:23052:10553/151‑1 (MQ=58)
                                                            CGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTTTTGACAATTAATCATCGGCTCGTATAATGTGATCAGCCCTGGAATTGTGAGCGGATAACAATTATTA                                                                                     >  NB501016:282:H2V7GAFX2:2:21106:2445:19386/1‑147 (MQ=54)
                                                              TTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATT                                                                                >  NB501016:282:H2V7GAFX2:3:21610:22388:7732/1‑150 (MQ=52)
                                                                 AACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAAC                                                                             <  NB501016:282:H2V7GAFX2:3:11402:16975:8733/150‑1 (MQ=46)
                                                                   CGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACTATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTC                                                                           >  NB501016:282:H2V7GAFX2:1:21305:3440:10506/1‑150 (MQ=41)
                                                                     CAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCG                                                                                                   <  NB501016:282:H2V7GAFX2:3:21412:10739:4769/124‑1 (MQ=42)
                                                                         AAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGG                                                                    <  NB501016:282:H2V7GAFX2:2:11302:20892:13148/151‑1 (MQ=31)
                                                                           ACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGATCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAG                                                                  <  NB501016:282:H2V7GAFX2:4:21502:23553:1383/151‑1 (MQ=26)
                                                                                     GGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATG                                                        <  NB501016:282:H2V7GAFX2:1:11208:15352:4757/151‑1 (MQ=5)
                                                                                     GGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATG                                                        >  NB501016:282:H2V7GAFX2:3:11612:8686:19628/1‑151 (MQ=5)
                                                                                      GTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCATATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGT                                                       >  NB501016:282:H2V7GAFX2:4:11408:10456:4471/1‑151 (MQ=5)
                                                                                           GTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTA                                                  <  NB501016:282:H2V7GAFX2:4:21606:10183:4142/151‑1 (MQ=5)
                                                                                             TTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGC                                                >  NB501016:282:H2V7GAFX2:2:21303:17218:14705/1‑151 (MQ=5)
                                                                                                TTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCAC                                              <  NB501016:282:H2V7GAFX2:1:11308:6374:4305/150‑1 (MQ=3)
                                                                                                        ACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCG                                     <  NB501016:282:H2V7GAFX2:4:21610:4791:7412/151‑1 (MQ=5)
                                                                                                         CTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGT                                    >  NB501016:282:H2V7GAFX2:1:11301:8336:11214/1‑151 (MQ=7)
                                                                                                         CTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGT                                    >  NB501016:282:H2V7GAFX2:2:21207:12160:4006/1‑151 (MQ=7)
                                                                                                                   CTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCG                          >  NB501016:282:H2V7GAFX2:4:11607:12994:10490/1‑151 (MQ=29)
                                                                                                                    TATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGG                         >  NB501016:282:H2V7GAFX2:1:21211:8508:17305/1‑151 (MQ=31)
                                                                                                                         AGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTC                    <  NB501016:282:H2V7GAFX2:1:11111:12837:7467/151‑1 (MQ=41)
                                                                                                                             CAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATC                 <  NB501016:282:H2V7GAFX2:1:21302:24098:12251/150‑1 (MQ=46)
                                                                                                                             CAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATC                 <  NB501016:282:H2V7GAFX2:4:21510:1439:7424/150‑1 (MQ=46)
                                                                                                                                     ATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGG        <  NB501016:282:H2V7GAFX2:2:21212:2226:16814/151‑1 (MQ=60)
                                                                                                                                     ATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGG        <  NB501016:282:H2V7GAFX2:2:21108:23206:6306/151‑1 (MQ=60)
                                                                                                                                     ATTACTATTGACAATTAATCATCGGCTCGTATAAAGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGG        <  NB501016:282:H2V7GAFX2:2:11109:19312:12543/151‑1 (MQ=60)
                                                                                                                                            ATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTG  <  NB501016:282:H2V7GAFX2:4:21511:24704:6741/151‑1 (MQ=60)
                                                                                                                                            |                                                                                                                                                      
CGTGTATGGTGACCCACGCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTAATTACAATTAATCATCGGCTCGTTTAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTCTTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTG  >  NC_002947_CJ‑RC/4767842‑4768131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: