Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F61 I1 R1 63 66.6 2847048 98.6% 2807189 146.5

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAATGCTGCCCACCTGGTGCGAAATGTCAGCAATTCGTTGGAGGATGTGGAAAACCTGTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCT  >  NC_002947_CJ‑RC/3052200‑3052483
                                                                                                                                              |                                                                                                                                             
AAATGCTGCCCACCTGGTGCGAAATGTCAGCAATTCGTTGGAGGATGTGGAAAACCTGTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGAT‑GACAACCTGG                                                                                                                                      >  NB501016:282:H2V7GAFX2:3:11510:11205:14155/1‑151 (MQ=60)
  ATGCTGCCCACCTGGTGCGAAATGTCAGCAATTCGTTGGAGGATGTGGAAAACCTGTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGC                                                                                                                                     >  NB501016:282:H2V7GAFX2:2:11312:26301:13147/1‑151 (MQ=60)
          CACCTGGTGCGAAATGTCAGCAATTCGTTGGAGGATGTGGAAAACCTGTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAAT                                                                                                                             <  NB501016:282:H2V7GAFX2:3:11605:17535:15642/151‑1 (MQ=60)
                   CGAAATGTCAGCAATTCGTTGGAGGATGTGGAAAACCTGTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGAT‑GACAACCTGGCTGCCGAATACGTCCAGGT                                                                                                                   >  NB501016:282:H2V7GAFX2:4:11606:16048:8689/1‑151 (MQ=60)
                       ATGTCAGCAATTCGTTGGAGGATGTGGAAAACCTGTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGAT‑GACAACCTGGCTGCCGAATACGTCCAGGTGGCG                                                                                                               >  NB501016:282:H2V7GAFX2:2:11212:24806:18536/1‑151 (MQ=60)
                               AATTCGTTGGAGGATGTGGAAAACCTGTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGAT‑GACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCG                                                                                                        >  NB501016:282:H2V7GAFX2:4:21405:2535:6543/1‑150 (MQ=60)
                                   CGTTGGAGGATGTGGAAAACCTGTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGAT‑GACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGG                                                                                                   <  NB501016:282:H2V7GAFX2:4:11510:3755:14596/151‑1 (MQ=60)
                                               TGGAAAACCTGTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGAT‑GACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCAT                                                                                       >  NB501016:282:H2V7GAFX2:4:21407:7820:15797/1‑151 (MQ=60)
                                                      CCTGTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGAT‑GACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGG                                                                                >  NB501016:282:H2V7GAFX2:3:11502:23026:11397/1‑151 (MQ=60)
                                                         GTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCGGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGG                                                                              <  NB501016:282:H2V7GAFX2:3:11608:10403:17294/151‑1 (MQ=60)
                                                         GTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGG                                                                              <  NB501016:282:H2V7GAFX2:2:11108:25234:9653/151‑1 (MQ=60)
                                                         GTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGG                                                                                <  NB501016:282:H2V7GAFX2:4:11507:13616:7429/149‑1 (MQ=60)
                                                                 CCCTGGTGGATATTTCCAAACTCGATGACGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGC                                                                      >  NB501016:282:H2V7GAFX2:3:21611:9310:15155/1‑151 (MQ=60)
                                                                  ACTGGTGGATTTTTGCAATCTCGATGCGGGGGTGTTCAAGGGAGATGTCGCGCGGTTTGCCCTCCTCGAACTTAT‑GACAACCTGGGTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCTTTTTGTTGGGTGTTCTGCCG                                                                    <  NB501016:282:H2V7GAFX2:4:21612:18961:8092/151‑1 (MQ=60)
                                                                                           GCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGAT‑GACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCT                                           <  NB501016:282:H2V7GAFX2:4:11608:2135:15051/151‑1 (MQ=60)
                                                                                                   GATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACG                                     <  NB501016:282:H2V7GAFX2:3:21411:24286:8215/150‑1 (MQ=60)
                                                                                                   GATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGAT‑GACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTACCGTCGTGCGCAGTG                                                        >  NB501016:282:H2V7GAFX2:1:11205:24422:9590/1‑130 (MQ=60)
                                                                                                    ATCAAGGCAGATATCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTG                                                               >  NB501016:282:H2V7GAFX2:2:21312:10221:19404/1‑123 (MQ=60)
                                                                                                       AAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGAT‑GACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCAGCTGGCACGCATCCT                               >  NB501016:282:H2V7GAFX2:1:11209:11817:1976/1‑151 (MQ=60)
                                                                                                          GCAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGAGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGC                             >  NB501016:282:H2V7GAFX2:3:11511:14259:15955/1‑151 (MQ=60)
                                                                                                           CAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCTTTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCG                            >  NB501016:282:H2V7GAFX2:3:11506:20915:5336/1‑151 (MQ=60)
                                                                                                                GTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACC                       <  NB501016:282:H2V7GAFX2:4:11409:2444:17050/151‑1 (MQ=60)
                                                                                                                   GCCCCGTTTGCCCTCCACGAACTGAT‑GACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCT                   >  NB501016:282:H2V7GAFX2:3:21610:18555:7728/1‑151 (MQ=60)
                                                                                                                      CCGTTTGCCCTCCACGAACTGAT‑GACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAG                <  NB501016:282:H2V7GAFX2:3:21606:24148:9178/151‑1 (MQ=60)
                                                                                                                                 CCACGAACTGAT‑GACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCC     <  NB501016:282:H2V7GAFX2:4:21603:18865:14917/151‑1 (MQ=60)
                                                                                                                                   ACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATG           <  NB501016:282:H2V7GAFX2:3:11512:22298:14982/144‑1 (MQ=60)
                                                                                                                                    CGAACTGAT‑GACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCT  >  NB501016:282:H2V7GAFX2:2:11207:16655:9478/1‑151 (MQ=60)
                                                                                                                                              |                                                                                                                                             
AAATGCTGCCCACCTGGTGCGAAATGTCAGCAATTCGTTGGAGGATGTGGAAAACCTGTTGGGTACCCTGGTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCT  >  NC_002947_CJ‑RC/3052200‑3052483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑